TADB
Escherichia coli str. K-12 substr. MG1655, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 4641652
Link to NCBI Taxonomy Browser by Tax_id :511145
 
# TA INFO in replicon: NC_000913
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 b0225 b0226 - 245961..246502 relBE/RHH-RelE
2 experimental 2 b0233 b0232 - 252005..252699 -/RHH-RelE-
3 experimental 1 b4419 b4420 - 1269168..1269389 -/-
4 experimental 1 b4421 b4422 - 1269703..1269923 -/-
5 experimental 1 b4423 b4424 - 1270238..1270460 -/-
6 experimental 1 b1348 b4714 - 1413556..1413927 -/-
7 experimental 2 b4532 b1438 - 1507310..1507948 hicBA/HicB-HicA
8 experimental 2 b1507 b1508 - 1588878..1590466 hipBA/Xre-HipA
9 experimental 2 b1563 b1564 - 1643370..1643896 relBE/RHH-RelE
10 experimental 4 b2005 b2004 - 2075136..2075967 yeeUV/-
11 experimental 2 b4539 b2017 - 2087235..2087737 yefM-yoeB/PHD-RelE
12 experimental 1 b4667 b4436 - 2153309..2153451 -/-
13 experimental 1 b4668 b4437 - 2153644..2153779 -/-
14 experimental 1 b4687 b4608 - 2700117..2700596 -/-
15 2 b2630 b2631 - 2765918..2767355 rnlAB/-
16 experimental 2 b2782 b2783 - 2908778..2909361 mazEF/AbrB-MazF
17 experimental 4 b2896 b2897 - 3040416..3041070 cptAB/-
18 experimental 1 b4665 b4446 - 3056849..3056988 -/-
19 experimental 2 b3022 b3021 - 3165873..3166566 ygiT-mqsR/Xre-YgiU
20 experimental 2 b3022 b3021 - 3167851..3168544 ygiT-mqsR (relBE) */Xre-YgiU
21 experimental 1 b4664 b4447 - 3194723..3194865 -/-
22 experimental 1 b4666 b4611 - 3195099..3195240 -/-
23 experimental 2 b3083 b3082 - 3231750..3232477 relBE */Xre-RelE
24 experimental 2 b3130 b3129 - 3275024..3275823 prlF-yhaV/AbrB-RelE
25 2 b3361 b3362 - 3488883..3489642 -/YhfG-Fic
26 experimental 1 b4613 b4712 - 3647705..3648146 -/-
27 experimental 1 b4453 b4454 - 3699980..3700201 -/-
28 experimental 1 b4618 b4616 - 3853118..3853642 -/-
29 experimental 5 b4559 b4128 - 4352584..4353081 ghoTS/-
30 2 b4225 b4224 - 4446470..4447065 mazEF */AbrB-MazF
31 2 b4566 b4307 - 4533239..4534053 -/-
32 experimental 1 b4347 b4625 - 4579499..4579911 -/-

experimental TA derived from experimental literature

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1b2398HTH_XRE/HTH_XRE/HTH_382.13b2399HTH_XRE/HTH_XRE/HTH_3/HipB82.89NC_000913
2b1562-65.26b1563RelE93.46NC_000913
3b1358-60.61b1357HTH_XRE/VapI71.57NC_000913
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.