TADB
Xylella fastidiosa 9a5c chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 2679306
Link to NCBI Taxonomy Browser by Tax_id :160492
 
# TA INFO in replicon: NC_002488
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 XF0533 XF0532 - 526772..527336 -/RHH-COG2929
2 2 XF0721 XF0720 - 680065..680668 higBA/Xre-RelE
3 2 XF1562 XF1563 - 1519136..1519727 -/RHH-COG2929
4 2 XF1573 XF1572 - 1524839..1525455 higBA/COG5606-RelE
5 2 XF1589 XF1588 - 1535977..1536873 vapBC/AbrB-PIN
6 2 XF1589 XF1590 - 1536445..1537134 vapBC/AbrB-PIN(toxin)
7 2 XF1597 XF1596 - 1540198..1540790 higBA/Xre-RelE
8 2 XF1678 XF1677 - 1609205..1609821 higBA/COG5606-RelE
9 2 XF1703 XF1702 - 1624326..1624936 higBA/Xre-RelE
10 2 XF1755 XF1754 - 1673842..1675110 -/Xre-COG5654
11 2 XF1862 XF1863 - 1778757..1779298 mazEF/XF1863-MazF
12 2 XF2029 XF2030 - 1935689..1936341 -/COG2442-PIN
13 2 XF2032 XF2031 - 1936530..1937086 parDE/-
14 2 XF2066 XF2067 - 1966667..1967251 relBE/-
15 2 XF2070 XF2071 - 1969111..1969531 parDE/RHH-RelE
16 2 XF2074 XF2075 - 1970188..1970750 relBE/-
17 2 XF2080 XF2081 - 1972992..1973520 relBE/RHH-RelE
18 experimental 2 XF2490 XF2491 - 2371566..2372272 ygiT-mqsR (relBE) */Xre-YgiU
19 2 XF2764 XF2763 - 2655084..2655737 higBA/-

experimental TA derived from experimental literature

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1XF2032ParE/Plasmid_stabil76.9XF2033-64.19NC_002488
2XF2075HTH_487.67XF2074Plasmid_stabil/ParE90.78NC_002488
3XF0502-60.1XF0501HTH_XRE/HTH_XRE/HTH_3/VapI73.95NC_002488
4XF2031-63.61XF2032ParE/Plasmid_stabil76.9NC_002488
5XF2125-61.64XF2126HTH_3/HTH_XRE/HTH_XRE77.51NC_002488
6XF2065-62.68XF2066Plasmid_stabil/ParE/RelE76.99NC_002488
7XF1863-67.68XF1862MazF/PemK75.36NC_002488
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.