TADB
Vibrio cholerae O1 biovar El Tor str. N16961 chromosome II, chromosome

# GENOME INFO
Genome size (bp) : 1072315
Link to NCBI Taxonomy Browser by Tax_id :243277
 
# TA INFO in replicon: NC_002506
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 experimental 2 VCA0311 VCA0312 - 322686..323264 parDE/PHD-RelE
2 experimental 2 VCA0318 VCA0319 - 325890..326656 -/RHH-GNAT
3 experimental 2 VCA0323 VCA0324 - 328018..328558 relBE/RHH-RelE
4 experimental 2 VCA0332 VCA0333 - 333953..334451 -/RHH-COG2929
5 experimental 2 VCA0348 VCA0349 - 343243..343886 -/RHH-COG2929(toxin)
6 experimental 2 VCA0359 VCA0360 - 349629..350376 parDE/-
7 experimental 2 VCA0385 VCA0386 - 365351..365929 parDE/PHD-RelE
8 experimental 2 VCA0391 VCA0392 - 369360..370041 higBA/Xre-RelE
9 experimental 2 VCA0423 VCA0422 - 387652..388301 relBE/PHD-RelE
10 experimental 2 VCA0444 VCA0445 - 399296..399824 relBE/PHD-RelE
11 experimental 2 VCA0468 VCA0469 - 414949..415582 higBA/Xre-RelE
12 experimental 2 VCA0478 VCA0477 - 419979..420528 relBE/PHD-RelE
13 experimental 2 VCA0481 VCA0482 - 421787..422553 -/RHH-GNAT
14 experimental 2 VCA0487 VCA0486 - 424470..425425 -/RHH-GNAT(toxin)
15 experimental 2 VCA0489 VCA0488 - 425627..426174 relBE/PHD-RelE
16 experimental 2 VCA0503 VCA0504 - 433035..433678 -/PHD-RelE(toxin)

experimental TA derived from experimental literature

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1VCA0272-63.55VCA0271HTH_XRE/HTH_XRE/HTH_372.59NC_002506
2VCA0469HTH_XRE/HTH_XRE/HTH_385.39VCA0468RelE86.72NC_002506
3VCA0349RelB/HTH_491.57VCA0348Plasmid_stabil/ParE93.26NC_002506
4VCA0445StbD92.1VCA0444RelE93.57NC_002506
5VCA0392VapI/HTH_XRE/HTH_3/HTH_XRE/HipB90.38VCA0391HigB/Plasmid_killer93.48NC_002506
6VCA0504RelB/HTH_491.57VCA0503Plasmid_stabil/ParE93.26NC_002506
7VCA0360-60.94VCA0359Plasmid_stabil/ParE92.18NC_002506
8VCA0423Plasmid_stabil/ParE87.02VCA0424-60.45NC_002506
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.