TADB
Mycobacterium bovis AF2122/97 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 4345492
Link to NCBI Taxonomy Browser by Tax_id :233413
 
# TA INFO in replicon: NC_002945
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Mb0246 Mb0245 - 287428..288106 vapBC/RHH-PIN
2 2 Mb0307 Mb0306 - 364299..364825 mazEF, ccd or relBE */RHH-MazF
3 2 Mb0309 Mb0308 - 364873..365516 vapBC/RHH-PIN
4 2 Mb0564c Mb0565c - 641576..642147 vapBC/RHH-PIN
5 2 Mb0597 Mb0596 - 678953..679572 vapBC/RHH-PIN
6 2 Mb0611c Mb0612c - 696084..696730 vapBC/PHD-PIN
7 2 Mb0614c Mb0615c - 698399..699045 vapBC/AbrB-PIN
8 2 Mb0625 Mb0624 - 704489..705132 vapBC/RHH-PIN
9 2 Mb0640 Mb0639 - 717656..718305 vapBC/RHH-PIN
10 2 Mb0643 Mb0642 - 719271..719935 vapBC/PHD-PIN
11 2 Mb0675c Mb0676c - 754753..755386 vapBC/RHH-PIN
12 2 Mb0678c Mb0679c - 756454..756994 mazEF/RHH-MazF
13 2 Mb0680c Mb0681c - 757104..757906 vapBC/RHH-PIN
14 2 Mb0684 Mb0683 - 760301..760908 vapBC/-
15 2 Mb0770 Mb0769 - 843137..843846 vapBC/RHH-PIN
16 2 Mb0943 Mb0942 - 1024677..1025650 -/RHH-GNAT
17 2 Mb1132c Mb1133c - 1232031..1232662 mazEF/-
18 2 Mb1144 Mb1143 - 1240787..1241355 vapBC/RHH-PIN
19 2 Mb1274 Mb1273 - 1385522..1386210 vapBC/RHH-PIN
20 2 Mb1278c Mb1279c - 1389929..1390488 relBE/PHD-RelE
21 2 Mb1432c Mb1433c - 1570419..1571074 vapBC/RHH-PIN
22 2 Mb1532 Mb1531 - 1683017..1683633 mazEF/-
23 2 Mb1587 Mb1586 - 1750927..1751555 vapBC/RHH-PIN
24 2 Mb1749c Mb1750c - 1932370..1932983 vapBC/RHH-PIN
25 2 Mb1770 Mb1769 - 1953102..1953562 vapBC/RHH-PIN
26 2 Mb1869c Mb1870c - 2077609..2078264 vapBC/RHH-PIN
27 2 Mb1977c Mb1978c - 2186278..2186981 mazEF/-
28 2 Mb1988 Mb1987 - 2192360..2192883 vapBC/RHH-PIN
29 2 Mb1990 Mb1991 - 2193218..2194221 higBA/Xre-RelE
30 2 Mb1994c Mb1995c - 2195315..2195859 parDE/RHH-RelE
31 2 Mb2011c Mb2012c - 2211655..2212553 -/COG5642-COG5654
32 2 Mb2033 Mb2032 - 2236946..2237587 vapBC/RHH-PIN
33 2 Mb2042 Mb2041 - 2244196..2245321 -/COG2442-PIN
34 2 Mb2045c Mb2044c - 2245721..2246640 relBE */Xre-RelE
35 2 Mb2061 Mb2060 - 2265207..2266015 -/ArsR-COG3832
36 2 Mb2129c Mb2130c - 2345927..2346622 vapBC/RHH-PIN
37 2 Mb2522 Mb2521 - 2774880..2775532 vapBC/RHH-PIN
38 2 Mb2556 Mb2555 - 2817888..2818513 vapBC/RHH-PIN
39 2 Mb2559c Mb2559Ac - 2821064..2821704 vapBC/RHH-PIN
40 2 Mb2576 Mb2575 - 2835236..2836020 vapBC/RHH-PIN
41 2 Mb2578 Mb2577 - 2836059..2836690 vapBC/RHH-PIN
42 2 Mb2579c Mb2580c - 2837180..2837817 vapBC/RHH-PIN
43 2 Mb2627 Mb2626 - 2892949..2893595 vapBC/AbrB-PIN
44 2 Mb2634 Mb2633 - 2897527..2898241 vapBC/RHH-PIN
45 2 Mb2778c Mb2779c - 3026744..3027423 vapBC/RHH-PIN
46 2 Mb2780c Mb2781c - 3027449..3028110 vapBC/RHH-PIN
47 2 Mb2853c Mb2854c - 3093191..3093795 vapBC/PHD-PIN
48 2 Mb2891 Mb2890 - 3134053..3134601 relBE/PHD-RelE
49 2 Mb2897 Mb2896 - 3139654..3140341 vapBC/RHH-PIN
50 2 Mb3206c Mb3207c - 3506504..3507393 vapBC */PHD-PIN
51 2 Mb3208 Mb3209 - 3507624..3508294 relBE */Xre-RelE
52 2 Mb3211 Mb3210 - 3508832..3509796 -/Xre-COG5654
53 2 Mb3349c Mb3350c - 3662164..3662838 vapBC/RHH-PIN
54 2 Mb3393 Mb3392 - 3724299..3724828 relBE/PHD-RelE
55 2 Mb3416c Mb3417c - 3751526..3752226 vapBC/PHD-PIN
56 2 Mb3442 Mb3441 - 3778880..3779586 vapBC/PHD-PIN
57 2 Mb3775c Mb3776c - 4133923..4134892 -/MerR-PIN

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Mb1995cCOG360988.69Mb1994cPlasmid_stabil/ParE92.63NC_002945
2Mb1133cCOG3609/HTH_483.47Mb1132cPemK/MazF88.23NC_002945
3Mb1433cHTH_487.15Mb1432cVapC/PIN/COG184887.26NC_002945
4Mb2577HTH_486.05Mb2578VapC/PIN/COG184886.81NC_002945
5Mb2577HTH_486.05Mb2576VapC/PIN86.5NC_002945
6Mb0308HTH_483.65Mb0309VapC/PIN/COG184885.16NC_002945
7Mb2896HTH_463.14Mb2897COG1848/PIN84.16NC_002945
8Mb2544cHTH_3/HTH_XRE/HTH_XRE/HipB63.05Mb2543cVapC/PIN83.69NC_002945
9Mb1531-61Mb1532PemK/MazF76.27NC_002945
10Mb1978c-60.58Mb1977cPemK/MazF75.18NC_002945
11Mb2032-60.97Mb2033PIN/VapC/COG184874.85NC_002945
12Mb2555-64.87Mb2556VapC/PIN74.75NC_002945
13Mb1750c-62.68Mb1749cCOG4113/PIN74.13NC_002945
14Mb1586-63.81Mb1587PIN/VapC/COG184873.74NC_002945
15Mb1870c-67.68Mb1869cCOG1848/PIN73.62NC_002945
16Mb0679c-65Mb0678cPemK/MazF73.6NC_002945
17Mb1143-67.1Mb1144VapC/PIN/COG184873.44NC_002945
18Mb2779c-63.06Mb2778cVapC/PIN/COG184873.22NC_002945
19Mb0685-67.1Mb0684VapC/PIN73.03NC_002945
20Mb2043c-62.64Mb2044cHTH_XRE/HTH_XRE/HTH_3/HipB72.56NC_002945
21Mb2130c-67.97Mb2129cCOG1848/PIN/VapC71.52NC_002945
22Mb0245-67.16Mb0246COG1848/PIN71.27NC_002945
23Mb1273-64.13Mb1274COG1848/PIN70.73NC_002945
24Mb2521-64.19Mb2522COG184870.6NC_002945
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.