TADB
Pseudomonas putida KT2440 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 6181863
Link to NCBI Taxonomy Browser by Tax_id :160488
 
# TA INFO in replicon: NC_002947
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 PP_0275 PP_0274 - 333189..334363 relBE */Xre-RelE
2 2 PP_0771 PP_0770 - 889455..890053 mazEF/AbrB-MazF
3 2 PP_1199 PP_1198 - 1373329..1373951 higBA/Xre-RelE
4 2 PP_1267 PP_1268 - 1449212..1450065 relBE/AbrB-RelE
5 2 PP_1480 PP_1479 - 1684535..1685118 hicBA/-
6 2 PP_1586 PP_1585 - 1777554..1778140 higBA/Xre-RelE
7 2 PP_2434 PP_2433 - 2780224..2781137 -/COG5642-COG5654
8 2 PP_2500 PP_2499 - 2846687..2847240 relBE/COG5642-COG5654(antitoxin)
9 2 PP_2939 PP_2940 - 3342445..3343003 relBE/PHD-RelE
10 2 PP_3032 PP_3033 - 3418567..3420181 -/Xre-Bro
11 2 PP_3900 PP_3899 - 4415057..4415646 hicBA/-
12 2 PP_4152 PP_4151 - 4690865..4691910 -/MerR-PIN
13 2 PP_4205 PP_4204 - 4750051..4750751 ygiT-mqsR (relBE) */Xre-YgiU
14 2 PP_4530 PP_4529 - 5144359..5144869 -/RHH-COG2929

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1PP_2499-68.26PP_2500Plasmid_stabil/ParE78.31NC_002947
2PP_1717-64.19PP_1716HTH_XRE/HTH_3/HTH_XRE/HipB73.79NC_002947
3PP_1585VapI/HTH_XRE/HTH_XRE/HTH_3/HipB88.06PP_1586HigB/Plasmid_killer93.9NC_002947
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.