TADB
Treponema denticola ATCC 35405 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 2843201
Link to NCBI Taxonomy Browser by Tax_id :243275
 
# TA INFO in replicon: NC_002967
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 TDE0036 TDE0037 - 42225..42889 vapBC */AbrB-PIN
2 2 TDE0197 TDE0196 - 232711..233285 vapBC/RHH-PIN
3 2 TDE0236 TDE0235 - 269062..269707 vapBC/-
4 2 TDE0277 TDE0278 - 308199..308872 vapBC/PHD-PIN
5 2 TDE0280 TDE0281 - 309985..310580 vapBC/RHH-PIN
6 2 TDE0303 TDE0302 - 333363..333919 relBE/RHH-RelE
7 2 TDE0452 TDE0453 - 510039..510454 hicBA */HicB-HicA
8 2 TDE0465 TDE0466 - 518358..518944 vapBC/PHD-PIN
9 2 TDE0482 TDE0481 - 538287..538856 hicBA/HicB-HicA
10 2 TDE0495 TDE0496 - 550602..551279 hipBA */Xre-HipA
11 2 TDE0505 TDE0506 - 558257..558807 relBE/RHH-RelE
12 2 TDE0599 TDE0600 - 638281..638867 vapBC/-
13 2 TDE0662 TDE0663 - 697662..698187 relBE/RHH-RelE
14 2 TDE0698 TDE0699 - 734712..735342 vapBC/-
15 2 TDE0735 TDE0736 - 774836..775320 relBE/RHH-RelE
16 2 TDE0737 TDE0738 - 775498..776024 relBE/RHH-RelE
17 2 TDE0887 TDE0888 - 904423..905065 vapBC/RHH-PIN
18 2 TDE0989 TDE0990 - 1017272..1017888 hicBA/HicB-HicA
19 2 TDE1116 TDE1115 - 1149128..1149754 higBA/Xre-RelE
20 2 TDE1635 TDE1634 - 1682875..1683409 -/RHH-COG2929
21 2 TDE1648 TDE1647 - 1696245..1696830 higBA/Xre-RelE
22 2 TDE1788 TDE1787 - 1826468..1827005 -/RHH-COG2929
23 2 TDE1801 TDE1800 - 1837517..1838054 -/RHH-COG2929
24 2 TDE1807 TDE1806 - 1843280..1843856 -/RHH-COG2929
25 2 TDE1838 TDE1837 - 1869632..1870255 hicBA/HicB-HicA
26 2 TDE1841 TDE1840 - 1871414..1871951 -/RHH-COG2929
27 2 TDE1961 TDE1962 - 1974640..1975294 vapBC/RHH-PIN
28 2 TDE1978 TDE1979 - 1991591..1992075 relBE/RHH-RelE
29 2 TDE2106 TDE2105 - 2131296..2131830 -/RHH-COG2929
30 2 TDE2127 TDE2126 - 2159673..2160304 vapBC/RHH-PIN
31 2 TDE2213 TDE2214 - 2252940..2253525 hicBA/HicB-HicA
32 2 TDE2247 TDE2246 - 2286272..2286831 mazEF/AbrB-MazF
33 2 TDE2252 TDE2253 - 2290936..2291559 hicBA/HicB-HicA
34 2 TDE2532 TDE2531 - 2558381..2559017 vapBC/RHH-PIN
35 2 TDE2564 TDE2563 - 2589934..2590453 mazEF/-
36 2 TDE2577 TDE2578 - 2602580..2603244 vapBC/RHH-PIN
37 2 TDE2757 TDE2758 - 2813813..2814461 -/HEPN-MNT

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1TDE0464-63.61TDE0465PIN/VapC75.34NC_002967
2TDE0196-67.68TDE0197PIN/VapC/COG184873.76NC_002967
3TDE0699-67.97TDE0698VapC/PIN/COG184873.9NC_002967
4TDE0281-63.58TDE0280VapC/PIN/COG184875.49NC_002967
5TDE0888-67.97TDE0887PIN/VapC/COG184872.74NC_002967
6TDE0278-67.16TDE0277PIN70.75NC_002967
7TDE1979-63.61TDE1978RelE81.05NC_002967
8TDE0226-63.61TDE0225Phd/StbD80.27NC_002967
9TDE1304-62.23TDE1305HTH_XRE/HTH_XRE/HTH_3/HipB/VapI/COG549971.48NC_002967
10TDE1115HTH_XRE/HTH_XRE/HTH_3/HipB87.86TDE1116RelE89.05NC_002967
11TDE1647HTH_XRE/HTH_XRE/HTH_3/HipB87TDE1648RelE92.19NC_002967
12TDE0481COG1598/HicB/HicB83.1TDE0482COG172483.81NC_002967
13TDE0738RelB90.69TDE0737RelE/Plasmid_killer92.15NC_002967
14TDE2253COG159882.74TDE2252COG172487.71NC_002967
15TDE1837COG159882.45TDE1838COG172486.22NC_002967
16TDE0736-65.26TDE0735RelE80.38NC_002967
17TDE2126-65.26TDE2127VapC/PIN/COG184877.15NC_002967
18TDE0600-63.93TDE0599VapC/PIN/COG1848/COG411375.55NC_002967
19TDE2563-61.52TDE2564MazF/PemK75.34NC_002967
20TDE1790-63.55TDE1789VapI/HTH_XRE/HTH_3/HTH_XRE73.33NC_002967
21TDE1813-63.55TDE1812VapI/HTH_XRE/HTH_3/HTH_XRE73.33NC_002967
22TDE2578-68.13TDE2577COG184871.57NC_002967
23TDE1962-65.35TDE1961COG1848/PIN71.72NC_002967
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.