TADB
Sinorhizobium meliloti 1021 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 3654135
Link to NCBI Taxonomy Browser by Tax_id :266834
 
# TA INFO in replicon: NC_003047
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 SMc00352 SMc00351 - 306948..308070 -/Xre-GNAT
2 2 SMc00393 SMc00392 - 343262..343929 vapBC/PHD-PIN
3 2 SMc04431 SMc04432 - 684058..684635 -/RHH-COG2929
4 2 SMc00822 SMc00823 - 843615..844306 relBE */Xre-RelE
5 2 SMc00900 SMc00899 - 882944..883584 vapBC/RHH-PIN
6 2 SMc02461 SMc02394 - 1147310..1147928 higBA/Xre-RelE
7 2 SMc02657 SMc02658 - 1166694..1167208 vapBC/AbrB-PIN
8 2 SMc01932 SMc01933 - 1397530..1398104 vapBC/RHH-PIN
9 2 SMc01177 SMc01176 - 1753714..1754348 vapBC/AbrB-PIN
10 2 SMc04221 SMc04222 - 2047573..2048380 -/RHH-GNAT
11 2 SMc04313 SMc04312 - 2132023..2132650 RelBE or parDE */RHH-RelE
12 2 SMc04161 SMc04162 - 2151324..2152155 -/ArsR-COG3832
13 2 SMc04441 SMc04269 - 2199475..2200129 hicBA/HicB-HicA
14 2 SMc02715 SMc02716 - 2564158..2564834 vapBC/RHH-PIN
15 experimental 2 SMc01521 SMc03949 - 2611440..2612113 vapBC/AbrB-PIN
16 2 SMc01995 SMc01836 - 2659700..2660387 relBE */Xre-RelE
17 2 SMc00739 SMc00740 - 2842713..2843479 -/RHH-GNAT
18 2 SMc00694 SMc00693 - 2885341..2885915 relBE/RHH-RelE
19 2 SMc00687 SMc00686 - 2890261..2890892 vapBC/AbrB-PIN
20 2 SMc02987 SMc02988 - 3108448..3109130 vapBC/RHH-PIN
21 2 SMc03137 SMc03136 - 3193423..3194126 vapBC/PHD-PIN
22 2 SMc02476 SMc02477 - 3320839..3321391 higBA/Xre-RelE
23 2 SMc03842 SMc03843 - 3508226..3508896 -/ArsR-COG3832
24 2 SMc04881 SMc04408 - 3616239..3616900 vapBC/AbrB-PIN

experimental TA derived from experimental literature

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1SMc02394VapI/HTH_XRE/HTH_XRE/HTH_3/HipB89.31SMc02461HigB/Plasmid_killer94.38NC_003047
2SMc02477VapI/HTH_XRE/HTH_XRE/HTH_3/COG549992.28SMc02476HigB/Plasmid_killer94.21NC_003047
3SMc04269COG1598/HTH_484.22SMc04441COG172487.97NC_003047
4SMc01521VapC/PIN/COG184889.23SMc01520-60.52NC_003047
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.