TADB
Agrobacterium tumefaciens str. C58 chromosome circular, complete chromosome

# GENOME INFO
Genome size (bp) : 2841580
Link to NCBI Taxonomy Browser by Tax_id :176299
 
# TA INFO in replicon: NC_003062
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Atu0246 Atu0245 - 243980..245097 -/Xre-GNAT
2 2 Atu0674 Atu0675 - 670257..670737 relBE/RHH-RelE
3 2 Atu0809 Atu0810 - 809575..810157 relBE/RHH-RelE
4 2 Atu0849 Atu0848 - 849385..850489 -/COG5642-COG5654
5 2 Atu0934 Atu0935 - 924141..924748 relBE/RHH-RelE
6 2 Atu0940 Atu0939 - 928967..929592 mazEF */AbrB-MazF
7 2 Atu1004 Atu1005 - 1001210..1001826 vapBC */RHH-PIN
8 2 Atu1078 Atu1079 - 1070711..1071287 RelBE or parDE */RHH-RelE
9 2 Atu1311 Atu1312 - 1304040..1305011 -/RHH-GNAT
10 2 Atu1510 Atu1511 - 1500923..1501472 RelBE or parDE */RHH-RelE
11 2 Atu1628 Atu1629 - 1614348..1615015 -/ArsR-COG3832
12 2 Atu1782 Atu1783 - 1768912..1769444 RelBE or parDE */RHH-RelE
13 2 Atu2017 Atu2018 - 1979333..1979853 relBE or parDE */PHD-RelE
14 2 Atu8169 Atu2028 - 1988551..1989404 -/ArsR-COG3832
15 2 Atu2033 Atu2034 - 1992395..1993289 -/ArsR-COG3832
16 2 Atu2140 Atu2141 - 2105478..2106309 vapBC */Xre-PIN
17 2 Atu2326 Atu2325 - 2301360..2302012 -/HEPN-MNT

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Atu0466-62.64Atu0465HTH_XRE/HTH_XRE/HTH_3/HipB70.74NC_003062
2Atu1005-68.39Atu1004PIN/VapC/COG184874.55NC_003062
3Atu0935RelB87.55Atu0934RelE90.15NC_003062
4Atu1511COG360988.94Atu1510ParE/Plasmid_stabil91.12NC_003062
5Atu1312COG360986.47Atu8154ParE/Plasmid_stabil86.95NC_003062
6Atu1783HTH_486.13Atu1782ParE/Plasmid_stabil92.7NC_003062
7Atu0675HTH_487.87Atu0674RelE93.83NC_003062
8Atu1734-60.97Atu1735HTH_XRE/HTH_XRE/HTH_3/HipB72.87NC_003062
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.