TADB
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

# GENOME INFO
Genome size (bp) : 4857432
Link to NCBI Taxonomy Browser by Tax_id :99287
 
# TA INFO in replicon: NC_003197
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 STM1550 STM1551 - 1626565..1627087 relBE/PHD-RelE
2 2 STM2905 STM2904 - 3047332..3048146 -/RHH-GNAT
3 2 STM2954.1n STM2955.S - 3102178..3102715 RelBE or parDE */RHH-RelE
4 experimental 2 STM3033 STM3034 - 3195156..3195781 vapBC/AbrB-PIN
5 2 STM3470 STM3471 - 3620354..3621113 -/YhfG-Fic
6 2 STM3516 STM3517 - 3679693..3680231 relBE/RHH-RelE
7 2 STM3558 STM3559 - 3727936..3728528 phd-doc/PHD-Fic
8 experimental 2 STM3651 STM3652 - 3837736..3838496 -/RHH-GNAT
9 2 STM3777 STM3778 - 3978794..3979460 relBE */Xre-RelE
10 2 STM3906 STM3907 - 4115668..4116323 higBA/COG5606-RelE
11 2 STM4031 STM4030.S - 4239649..4240403 relBE */Xre-RelE
12 experimental 2 STM4031 STM4030.S - 4239649..4240403 relBE */Xre-RelE
13 experimental 2 STM4032.2N STM4033 - 4241636..4242238 relBE */Xre-RelE
14 2 STM4032.2N STM4033 - 4241636..4242238 relBE */Xre-RelE
15 2 STM4318 STM4317 - 4562560..4563341 -/RHH-GNAT
16 2 STM4450 STM4449 - 4691448..4691964 relBE/RHH-RelE
17 2 STM4528 STM4529 - 4785649..4786225 -/RHH-COG2929
18 2 STM4528 STM4529 - 4785649..4786225 -/RHH-COG2929

experimental TA derived from experimental literature

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1STM2414HTH_XRE/HTH_XRE/HTH_383.25STM2413HTH_XRE/HTH_XRE84.07NC_003197
2STM2629-63.06STM2628HTH_XRE/HipB73.19NC_003197
3STM1011-63.06STM1012HTH_XRE/HipB73.19NC_003197
4STM1551StbD91.4STM1550RelE91.99NC_003197
5STM2955.SCOG360988.28STM2954.1nParE/Plasmid_stabil91.27NC_003197
6STM4449RelB90.8STM4450RelE93.38NC_003197
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.