TADB
Listeria innocua Clip11262, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 3011208
Link to NCBI Taxonomy Browser by Tax_id :272626
 
# TA INFO in replicon: NC_003212
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 lin0160 lin0161 - 155931..156742 -/Xre-COG2856
2 2 lin0887 lin0886 - 920292..920921 mazEF/RHH-MazF
3 2 lin1233 lin1234 - 1248769..1249633 -/Xre-COG2856
4 2 lin1763 lin1762 - 1759363..1760248 -/Xre-COG2856
5 2 lin2608 lin2607 - 2623190..2623982 -/Xre-COG2856

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1lin0886COG360985.7lin0887PemK/MazF88.84NC_003212
2lin2604-66.22lin2605HTH_XRE/HTH_XRE/HTH_3/VapI/HipB78.2NC_003212
3lin1298-67.9lin1297HTH_XRE/HTH_XRE/HTH_373.87NC_003212
4lin0438-61.52lin0437HTH_XRE/HTH_XRE/HTH_3/VapI73.07NC_003212
5lin1698-62.64lin1699HTH_XRE70.46NC_003212
6lin1380-64.19lin1381Plasmid_killer70.43NC_003212
7lin1381Plasmid_killer70.43lin1382-63.84NC_003212
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.