TADB
Pyrobaculum aerophilum str. IM2 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 2222430
Link to NCBI Taxonomy Browser by Tax_id :178306
 
# TA INFO in replicon: NC_003364
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 PAE0033 PAE0030a - 14684..15275 vapBC/-
2 2 PAE0045 PAE0044 - 21915..22641 -/HEPN-MNT
3 2 PAE0101 PAE0100 - 54121..54703 vapBC/AbrB-PIN
4 experimental 2 PAE0151 PAE0152 - 81756..82368 vapBC/RHH-PIN
5 2 PAE0166 PAE0165 - 86727..87432 -/HEPN-MNT
6 2 PAE0167 PAE0168 - 87429..88186 -/HEPN-MNT
7 2 PAE0337 PAE0335 - 190768..191489 vapBC/RHH-PIN
8 2 PAE0391a PAE0393 - 219654..220237 vapBC */COG2886-PIN
9 2 PAE0401 PAE0399 - 222410..222990 -/HEPN-MNT
10 2 PAE0498 PAE0497 - 270814..271451 vapBC */AbrB-PIN
11 2 PAE0905 PAE0904 - 522079..522773 -/HEPN-MNT
12 2 PAE1153 PAE1155 - 677296..678004 -/HEPN-MNT
13 2 PAE1311 PAE1310 - 780025..780608 -/HEPN-MNT
14 2 PAE1320 PAE1319 - 782022..782718 -/HEPN-MNT
15 2 PAE1870 PAE1869 - 1104840..1105647 -/HEPN-MNT
16 2 PAE1891 PAE1890 - 1115856..1116712 vapBC */COG2886-PIN
17 2 PAE1893 PAE1894 - 1117002..1117761 -/HEPN-MNT
18 2 PAE1903 PAE1902 - 1121999..1122705 -/HEPN-MNT
19 2 PAE1951 PAE1949 - 1147898..1148673 -/HEPN-MNT
20 2 PAE2034 PAE2032 - 1196417..1197217 -/HEPN-MNT
21 2 PAE2551 PAE2550 - 1520935..1521679 -/HEPN-MNT
22 2 PAE2676 PAE2678 - 1591505..1592229 vapBC/-
23 experimental 2 PAE2754 PAE2755 - 1635106..1635721 vapBC/RHH-PIN
24 2 PAE2760 PAE2759 - 1638507..1639247 -/HEPN-MNT
25 2 PAE2784 PAE2783 - 1648620..1649386 -/HEPN-MNT
26 2 PAE2829 PAE2828 - 1672925..1673546 vapBC/AbrB-PIN
27 2 PAE2851 PAE2849 - 1684077..1684807 vapBC */COG2886-PIN

experimental TA derived from experimental literature

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1PAE0030a-61.74PAE0033VapC/PIN/COG184874.66NC_003364
2PAE2755-67.93PAE2754COG4113/PIN73.6NC_003364
3PAE1445-64.13PAE1443COG360973.5NC_003364
4PAE2024-62.68PAE2022HTH_473.42NC_003364
5PAE0152-65.58PAE0151COG4113/PIN/COG184872.76NC_003364
6PAE2678-62.71PAE2676COG1848/PIN72NC_003364
7PAE2358-67.93PAE2357HTH_470.24NC_003364
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.