TADB
Pseudomonas protegens Pf-5 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 7074893
Link to NCBI Taxonomy Browser by Tax_id :220664
 
# TA INFO in replicon: NC_004129
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 PFL_0169 PFL_0170 - 209336..209846 -/RHH-COG2929
2 2 PFL_0653 PFL_0652 - 760032..760661 relBE */Xre-RelE
3 2 PFL_0749 PFL_0750 - 875016..876016 -/COG5642-COG5654
4 2 PFL_1053 PFL_1052 - 1203674..1204596 ygiT-mqsR (relBE) */Xre-YgiU
5 2 PFL_2689 PFL_2688 - 2964154..2965526 vapBC */Xre-PIN
6 2 PFL_3910 PFL_3911 - 4514457..4515111 relBE */Xre-RelE
7 2 PFL_4044 PFL_4043 - 4659722..4661301 -/Xre-GNAT
8 2 PFL_5187 PFL_5188 - 5947125..5947804 relBE */Xre-RelE
9 2 PFL_5368 PFL_5369 - 6137750..6138334 relBE */Xre-RelE
10 2 PFL_5748 PFL_5749 - 6550340..6550901 relBE */Xre-RelE
11 2 PFL_6113 PFL_6112 - 6941155..6941797 relBE */Xre-RelE
12 2 PFL_6156 PFL_6155 - 6988650..6990241 hipBA */Xre-HipA

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1PFL_5369VapI/HTH_XRE/HTH_XRE/HTH_393.09PFL_5368Plasmid_killer/HigB93.5NC_004129
2PFL_5749HTH_XRE/HTH_XRE/HipB/HTH_384.23PFL_5748RelE92.74NC_004129
3PFL_2214ParE/Plasmid_stabil87.46PFL_2213COG360991.71NC_004129
4PFL_6156HipA84.51PFL_6155HTH_XRE/HTH_XRE/HTH_3/HipB90.89NC_004129
5PFL_1053-61.52PFL_1052HTH_3/HTH_XRE/HTH_XRE70.09NC_004129
6PFL_0652HTH_XRE/HTH_XRE/HTH_378.01PFL_0653-62.64NC_004129
7PFL_5749HTH_XRE/HTH_XRE/HipB/HTH_384.23PFL_5750-61.55NC_004129
8PFL_0651-60.32PFL_0652HTH_XRE/HTH_XRE/HTH_378.01NC_004129
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.