TADB
Shewanella oneidensis MR-1 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 4969811
Link to NCBI Taxonomy Browser by Tax_id :211586
 
# TA INFO in replicon: NC_004347
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 SO_0636 SO_0637 - 663421..664187 -/RHH-GNAT
2 2 SO_0706 SO_0705 - 723011..724609 hipBA */Xre-HipA
3 2 SO_1444 SO_1445 - 1507546..1508110 parDE/-
4 experimental 2 SO_3165 SO_3166 - 3301651..3302468 -/HEPN-MNT
5 2 SO_3170 SO_3169 - 3305360..3307104 hipBA */Xre-HipA
6 2 SO_4641 SO_4642 - 4837815..4838365 relBE/PHD-RelE

experimental TA derived from experimental literature

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1SO_0706HipA84.1SO_0705HTH_XRE/HTH_XRE/HipB/HTH_386.57NC_004347
2SO_2988-60.29SO_2989HTH_3/HTH_XRE/HTH_XRE/HipB78.13NC_004347
3SO_3170HipA62.81SO_3169HTH_XRE/HTH_XRE/HTH_3/HipB75.07NC_004347
4SO_2332-64.19SO_2331HTH_472.85NC_004347
5SO_0062-61.42SO_0063HipA71.82NC_004347
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.