TADB
Escherichia coli CFT073 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5231428
Link to NCBI Taxonomy Browser by Tax_id :199310
 
# TA INFO in replicon: NC_004431
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 c0060 c0059 - 53019..53569 ccd/RHH-MazF
2 2 c1910 c1909 - 1745044..1745600 higBA/Xre-RelE
3 2 c1940 c1941 - 1781779..1783475 hipBA */Xre-HipA
4 2 c2544 c2545 - 2377268..2377770 yefM-yoeB/PHD-RelE
5 2 c3274 c3273 - 3121577..3122304 relBE */Xre-RelE
6 2 c3841 c3840 - 3674123..3674706 relBE */Xre-RelE
7 2 c3885 c3884 - 3714321..3715120 relBE/AbrB-RelE
8 2 c4136 c4137 - 3922249..3923008 -/YhfG-Fic
9 2 c4178 c4179 - 3960843..3961350 relBE */Xre-RelE
10 2 c4837 c4838 - 4601742..4602344 higBA/Xre-RelE
11 2 c5296 c5295 - 5035027..5036108 hipBA */Xre-HipA
12 2 c5476 c5475 - 5216696..5218352 higBA/Xre-RelE
13 2 c5476 c5477 - 5217942..5218638 higBA/Xre-RelE(toxin)

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1c2934HTH_XRE/HTH_XRE/HTH_382.13c2935HTH_XRE/HTH_XRE/HTH_3/HipB82.89NC_004431
2c1909VapI/HTH_XRE/HTH_XRE/HTH_393.35c1910Plasmid_killer/HigB93.36NC_004431
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.