TADB
Pectobacterium atrosepticum SCRI1043 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5064019
Link to NCBI Taxonomy Browser by Tax_id :218491
 
# TA INFO in replicon: NC_004547
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 ECA0063 ECA0064 - 79098..79633 relBE/PHD-RelE
2 2 ECA0127 ECA0126 - 145496..147051 hipBA */Xre-HipA
3 2 ECA0253 ECA0254 - 298566..299440 phd-doc/PHD-Fic
4 2 ECA0326 ECA0325 - 374208..374739 relBE/PHD-RelE
5 2 ECA0366 ECA0367 - 418295..419019 relBE */Xre-RelE
6 2 ECA0409 ECA0408 - 466558..467094 relBE/RHH-RelE
7 2 ECA0443 ECA0444 - 508848..509350 relBE/PHD-RelE
8 2 ECA0582 ECA0583 - 644602..645260 mazEF/AbrB-MazF
9 2 ECA0674 ECA0673 - 747115..747822 higBA/Xre-RelE
10 2 ECA0959 ECA0958 - 1069781..1070561 -/RHH-GNAT
11 2 ECA1466 ECA1467 - 1666599..1667191 parDE/RHH-RelE
12 2 ECA1676 ECA1677 - 1923957..1924540 mazEF/AbrB-MazF
13 2 ECA2241 ECA2242 - 2541855..2542454 parDE/PHD-RelE
14 2 ECA2514 ECA2513 - 2830278..2831090 hicBA/-
15 2 ECA2758 ECA2757 - 3100258..3100777 relBE/RHH-RelE
16 2 ECA2803 ECA2804 - 3144548..3145458 -/COG5642-COG5654
17 2 ECA2850 ECA2851 - 3194782..3195440 vapBC/AbrB-PIN
18 2 ECA3686 ECA3687 - 4135032..4135672 vapBC/AbrB-PIN
19 2 ECA4153 ECA4154 - 4641917..4643495 hipBA */Xre-HipA

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1ECA0064StbD90.8ECA0063RelE93.3NC_004547
2ECA0673HTH_XRE/HTH_XRE/HTH_3/HipB/VapI86.06ECA0674RelE92.57NC_004547
3ECA0325StbD92.33ECA0326RelE93.63NC_004547
4ECA2757HTH_487.79ECA2758Plasmid_stabil/ParE92.38NC_004547
5ECA0512HTH_XRE/HTH_XRE/HTH_391.36ECA0511CcdA/COG530292.3NC_004547
6ECA0964HTH_XRE/HTH_XRE/HTH_3/HipB88.89ECA0965HTH_XRE/HTH_XRE/HTH_3/HipB/VapI90.59NC_004547
7ECA0964HTH_XRE/HTH_XRE/HTH_3/HipB88.89ECA0963CcdA/COG530289.64NC_004547
8ECA0581-60.29ECA0582MazF/PemK87.2NC_004547
9ECA0408-67.71ECA0409Plasmid_stabil/ParE78.99NC_004547
10ECA2242-65.58ECA2241RelE73.87NC_004547
11ECA3402-67.68ECA3401HTH_XRE/HTH_XRE/HTH_3/HipB73.28NC_004547
12ECA3409-62.64ECA3408HTH_XRE/HTH_XRE/HTH_3/HipB72.73NC_004547
13ECA3418-62.64ECA3417HTH_XRE/HTH_XRE/HTH_3/HipB72.73NC_004547
14ECA3709-60.03ECA3708HTH_XRE/HTH_XRE/HTH_3/HipB71.96NC_004547
15ECA1676MazF/PemK91.81ECA1675-62.74NC_004547
16ECA3686VapC/PIN87.81ECA3685-62.64NC_004547
17ECA3392-63.55ECA3391HTH_XRE/HTH_XRE/HTH_3/HipB/VapI74.51NC_004547
18ECA2120-63.03ECA2121SpoVT_AbrB74.43NC_004547
19ECA0126-65.35ECA0127HipA71.01NC_004547
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.