TADB
Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete chromosome

# GENOME INFO
Genome size (bp) : 6397126
Link to NCBI Taxonomy Browser by Tax_id :223283
 
# TA INFO in replicon: NC_004578
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 PSPTO_0213 PSPTO_0214 - 239026..239619 higBA/Xre-RelE
2 2 PSPTO_0241 PSPTO_0240 - 261079..261693 parDE/PHD-RelE
3 2 PSPTO_0336 PSPTO_0337 - 366822..367374 relBE/PHD-RelE
4 2 PSPTO_0423 PSPTO_0422 - 467890..468474 higBA/Xre-RelE
5 2 PSPTO_0522 PSPTO_0521 - 569661..571171 hipBA */Xre-HipA
6 2 PSPTO_0719 PSPTO_0720 - 769966..770413 relBE */Xre-RelE
7 2 PSPTO_0931 PSPTO_0930 - 1009217..1010313 -/COG2442-PIN
8 2 PSPTO_1037 PSPTO_1038 - 1137307..1138214 -/COG5642-COG5654
9 2 PSPTO_1045 PSPTO_1046 - 1143628..1144262 vapBC/AbrB-PIN
10 2 PSPTO_1057 PSPTO_1058 - 1153738..1154387 vapBC/-
11 2 PSPTO_1634 PSPTO_1635 - 1790464..1791086 hicBA/HicB-HicA
12 2 PSPTO_1999 PSPTO_2000 - 2183895..2184598 vapBC/PHD-PIN
13 2 PSPTO_3677 PSPTO_3676 - 4143187..4143700 relBE/RHH-RelE
14 2 PSPTO_5374 PSPTO_5375 - 6107632..6108296 higBA/Xre-RelE
15 2 PSPTO_5387 PSPTO_5388 - 6119030..6119549 relBE/RHH-RelE

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1PSPTO_0240-62.64PSPTO_0241Plasmid_stabil73.13NC_004578
2PSPTO_0214VapI/HTH_XRE/HTH_XRE/HTH_391.64PSPTO_0213HigB/Plasmid_killer94NC_004578
3PSPTO_1635COG1598/COG360961.84PSPTO_1634COG172485.71NC_004578
4PSPTO_3888HTH_XRE/HTH_XRE/HTH_3/HipB70.97PSPTO_3889-61NC_004578
5PSPTO_0422VapI/HTH_XRE/HTH_XRE/HTH_392.35PSPTO_0423Plasmid_killer/HigB93.59NC_004578
6PSPTO_3676HTH_490.96PSPTO_3677ParE/Plasmid_stabil92.78NC_004578
7PSPTO_0716HTH_XRE/HTH_XRE/HTH_3/HipB/COG549986.58PSPTO_0717HTH_XRE/HTH_XRE/HTH_3/HipB88.82NC_004578
8PSPTO_5386-62.81PSPTO_5387RelE93.24NC_004578
9PSPTO_3887-64PSPTO_3888HTH_XRE/HTH_XRE/HTH_3/HipB70.97NC_004578
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.