TADB
Nitrosomonas europaea ATCC 19718 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 2812094
Link to NCBI Taxonomy Browser by Tax_id :228410
 
# TA INFO in replicon: NC_004757
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 NE0261 NE0262 - 296385..296921 parDE/RHH-RelE
2 2 NE0264 NE0263 - 297181..298096 -/ArsR-COG3832
3 2 NE0292 NE0289 - 317296..320270 relBE/RHH-RelE
4 2 NE0292 NE0293 - 319812..320587 relBE/RHH-RelE(toxin)
5 2 NE0476 NE0475 - 516404..516857 relBE/RHH-RelE
6 2 NE0479 NE0478 - 519527..520161 vapBC/AbrB-PIN
7 2 NE0482 NE0481 - 520813..521415 higBA/Xre-RelE
8 2 NE0491 NE0490 - 531968..532621 higBA/Xre-RelE
9 2 NE0498 NE0497 - 536217..536887 vapBC/AbrB-PIN
10 2 NE0552 NE0551 - 597544..598118 parDE/RHH-RelE
11 2 NE0702 NE0703 - 762841..763451 relBE/PHD-RelE
12 2 NE0713 NE0712 - 770522..771069 relBE/PHD-RelE
13 2 NE0821 NE0822 - 893112..894225 -/Xre-COG5654
14 2 NE0974 NE0975 - 1057892..1058484 mazEF/AbrB-MazF
15 2 NE1064 NE1065 - 1154443..1155119 vapBC/RHH-PIN
16 2 NE1067 NE1066 - 1155365..1156071 vapBC */PHD-PIN
17 2 NE1075 NE1074 - 1161954..1162618 -/HEPN-MNT
18 2 NE1076 NE1077 - 1162704..1163428 ccd/RHH-MazF
19 2 NE1090 NE1091 - 1182090..1182879 RelBE or parDE */RHH-RelE
20 2 NE1103 NE1104 - 1195700..1196463 -/RHH-GNAT
21 2 NE1109 NE1110 - 1200249..1200899 higBA/Xre-RelE
22 experimental 2 NE1181 NE1182 - 1279373..1279949 mazEF/-
23 2 NE1225 NE1224 - 1333144..1333861 vapBC/AbrB-PIN
24 2 NE1305 NE1304 - 1426056..1426649 higBA/Xre-RelE
25 2 NE1306 NE1307 - 1426777..1427432 mazEF */XF1863-MazF
26 2 NE1310 NE1311 - 1429522..1431064 hipBA */Xre-HipA
27 2 NE1345 NE1346 - 1474137..1474708 relBE/PHD-RelE
28 2 NE1349 NE1350 - 1476105..1476753 vapBC/AbrB-PIN
29 2 NE1356 NE1355 - 1480914..1481562 higBA/AbrB-PIN(antitoxin)
30 2 NE1371 NE1372 - 1496257..1496731 higBA/Xre-RelE
31 2 NE1373 NE1374 - 1496762..1497386 vapBC/AbrB-PIN
32 2 NE1377 NE1376 - 1497929..1499024 vapBC */AbrB-PIN
33 2 NE1525 NE1524 - 1655769..1656368 RelBE or parDE */RHH-RelE
34 2 NE1535 NE1534 - 1669151..1669862 -/HEPN-MNT
35 2 NE1563 NE1562 - 1695137..1695668 relBE/PHD-RelE
36 2 NE1577 NE1578 - 1711067..1711641 relBE/PHD-RelE
37 2 NE1579 NE1580 - 1712013..1712578 mazEF/RHH-MazF
38 2 NE1581 NE1582 - 1712785..1713464 vapBC/RHH-PIN
39 2 NE1584 NE1583 - 1714058..1714592 relBE/PHD-RelE
40 2 NE1588 NE1587 - 1715875..1716565 relBE */Xre-RelE
41 2 NE1589 NE1590 - 1717946..1718652 vapBC/RHH-PIN
42 2 NE1591 NE1592 - 1719177..1719712 parDE/-
43 2 NE1599 NE1598 - 1724620..1725156 relBE/PHD-RelE
44 2 NE1999 NE1998 - 2159012..2159841 relBE/AbrB-RelE
45 2 NE2104 NE2103 - 2290451..2290955 -/RHH-COG2929
46 2 NE2107 NE2106 - 2291972..2292885 -/COG5642-COG5654
47 2 NE2112 NE2111 - 2296116..2296795 vapBC/PHD-PIN
48 2 NE2114 NE2115 - 2297645..2298231 parDE/PHD-RelE
49 2 NE2174 NE2175 - 2362394..2362952 vapBC/Xre-PIN
50 2 NE2224 NE2225 - 2411313..2412135 -/HEPN-MNT
51 2 NE2538 NE2537 - 2776868..2778096 -/Xre-COG2856

experimental TA derived from experimental literature

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1NE1524COG360986.32NE1525ParE/Plasmid_stabil87.76NC_004757
2NE1307-62.42NE1306MazF74.7NC_004757
3NE1376SpoVT_AbrB82.32NE1377PIN/COG184862.06NC_004757
4NE1580-66.22NE1579PemK/MazF75.48NC_004757
5NE1091-60.32NE1090Plasmid_stabil/ParE76.85NC_004757
6NE0490VapI/HTH_XRE/HTH_3/HTH_XRE/COG549989.27NE0491HigB/Plasmid_killer93.36NC_004757
7NE1304VapI/HTH_XRE/HTH_XRE/HTH_3/HipB90.84NE1305Plasmid_killer/HigB93.16NC_004757
8NE1592-63.06NE1591ParE/Plasmid_stabil77.82NC_004757
9NE1598-65NE1599Plasmid_killer/HigB77.91NC_004757
10NE0551-63.03NE0552ParE/Plasmid_stabil79.19NC_004757
11NE1583StbD91.86NE1584RelE92.34NC_004757
12NE1376SpoVT_AbrB82.32NE1375HTH_XRE/HTH_XRE/HTH_384.4NC_004757
13NE0475HTH_4/COG360989.94NE0476RelE/Plasmid_stabil93.41NC_004757
14NE2175-66.22NE2174VapC/PIN/COG184873.99NC_004757
15NE0481VapI/HTH_XRE/HTH_XRE/HTH_390.58NE0482HigB/Plasmid_killer93.6NC_004757
16NE0262COG360987.03NE0261Plasmid_stabil/ParE92.51NC_004757
17NE1578StbD90.59NE1577ParE/Plasmid_stabil90.81NC_004757
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.