TADB
Photorhabdus luminescens subsp. laumondii TTO1, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5688987
Link to NCBI Taxonomy Browser by Tax_id :243265
 
# TA INFO in replicon: NC_005126
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 plu0179 plu0180 - 190549..191309 -/RHH-GNAT
2 2 plu0205 plu0206 - 210863..211490 higBA/Xre-RelE
3 2 plu0251 plu0252 - 268771..269462 parDE/PHD-RelE
4 2 plu0255 plu0254 - 271527..272074 relBE/RHH-RelE
5 2 plu0284 plu0283 - 300775..301673 relBE */Xre-RelE
6 2 plu0442 plu0443 - 473273..473878 higBA/Xre-RelE
7 2 plu0625 plu0624 - 710551..711161 parDE/-
8 2 plu0647 plu0646 - 743732..744066 higBA/Xre-RelE
9 2 plu0707 plu0706 - 816018..816646 hicBA/HicB-HicA
10 2 plu0862 plu0861 - 990558..991354 -/RHH-GNAT
11 2 plu0866 plu0865 - 993019..993589 higBA/Xre-RelE
12 2 plu0896 plu0895 - 1019169..1020832 hipBA */Xre-HipA
13 2 plu0929 plu0928 - 1070131..1070699 vapBC/AbrB-PIN
14 2 plu0958 plu0959 - 1098452..1099251 -/RHH-GNAT
15 2 plu1065 plu1064 - 1241604..1242235 relBE/Xre-RelE
16 2 plu1224 plu1223 - 1416046..1416761 higBA/COG5606-RelE
17 2 plu1326 plu1325 - 1543172..1543715 relBE/RHH-RelE
18 2 plu1618 plu1617 - 1933252..1934039 -/RHH-GNAT
19 2 plu1811 plu1812 - 2158719..2159358 higBA/Xre-RelE
20 2 plu1932 plu1931 - 2298828..2299552 higBA/Xre-RelE
21 2 plu1974 plu1973 - 2347189..2347786 relBE/RHH-RelE
22 2 plu2050 plu2051 - 2422050..2422773 vapBC/AbrB-PIN
23 2 plu2099 plu2098 - 2485287..2485937 higBA/Xre-RelE
24 2 plu2105 plu2104 - 2489197..2489740 relBE/PHD-RelE
25 2 plu2126 plu2127 - 2510971..2511803 hipBA */Xre-HipA
26 2 plu2130 plu2131 - 2514732..2515416 higBA/Xre-RelE
27 2 plu2155 plu2154 - 2538674..2539255 ccd/RHH-MazF
28 2 plu2210 plu2211 - 2597868..2598650 parDE/RHH-RelE
29 2 plu2251 plu2250 - 2645866..2646394 parDE/RHH-RelE
30 2 plu2255 plu2254 - 2647947..2648296 phd-doc */PHD-Fic
31 2 plu2264 plu2265 - 2662395..2662942 relBE/PHD-RelE
32 2 plu2269 plu2270 - 2666798..2667376 parDE/RHH-RelE
33 2 plu2279 plu2278 - 2676117..2676673 ccd/RHH-MazF
34 2 plu2306 plu2305 - 2706235..2706797 relBE/-
35 2 plu2308 plu2309 - 2707235..2707825 relBE/-
36 2 plu2358 plu2357 - 2776291..2777215 -/COG5642-COG5654
37 2 plu2365 plu2366 - 2783921..2784524 mazEF/AbrB-MazF
38 2 plu2368 plu2369 - 2785086..2785732 vapBC/RHH-PIN
39 2 plu2372 plu2371 - 2786047..2786839 parDE/RHH-RelE
40 2 plu2423 plu2422 - 2845646..2847298 hipBA */Xre-HipA
41 2 plu2537 plu2536 - 2984404..2985048 relBE/Xre-RelE
42 2 plu2537 plu2538 - 2984737..2985468 relBE/Xre-RelE(toxin)
43 2 plu2650 plu2651 - 3104141..3104993 -/RHH-GNAT
44 2 plu2706 plu2705 - 3208873..3209344 higBA/-
45 2 plu2845 plu2846 - 3376694..3377321 higBA/Xre-RelE
46 2 plu3002 plu3003 - 3504632..3505212 higBA/Xre-RelE
47 2 plu3057 plu3058 - 3561555..3562226 vapBC/RHH-PIN
48 2 plu3316 plu3315 - 3931249..3931867 parDE/PHD-RelE
49 2 plu3492 plu3491 - 4086639..4087325 hicBA/HicB-HicA
50 2 plu3890 plu3889 - 4565534..4566347 -/RHH-GNAT
51 2 plu3944 plu3943 - 4628386..4629243 relBE/AbrB-RelE
52 2 plu3960 plu3959 - 4646879..4647417 relBE/RHH-RelE
53 2 plu3981 plu3982 - 4669325..4670004 higBA/Xre-RelE
54 2 plu4196 plu4195 - 4909679..4910500 higBA/Xre-RelE
55 2 plu4282 plu4283 - 5009120..5009673 relBE/RHH-RelE
56 2 plu4296 plu4295 - 5020954..5021409 ccd/RHH-MazF
57 2 plu4353 plu4354 - 5086770..5087447 hicBA/-
58 2 plu4366 plu4365 - 5098920..5099320 relBE */Xre-RelE
59 2 plu4467 plu4466 - 5220898..5221578 higBA/Xre-RelE
60 2 plu4594 plu4593 - 5359014..5359633 relBE/PHD-RelE
61 2 plu4633 plu4634 - 5401970..5402550 higBA/-
62 2 plu4778 plu4779 - 5559629..5560293 higBA/Xre-RelE
63 2 plu4781 plu4782 - 5561171..5561832 higBA/COG5606-RelE
64 2 plu4785 plu4784 - 5562358..5562895 parDE/RHH-RelE
65 2 plu4900 plu4901 - 5678109..5679743 hipBA */Xre-HipA
66 experimental 3 PLU_RS24160 - tenpIN/-

experimental TA derived from experimental literature

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1plu1812VapI/HTH_XRE/HTH_XRE/HTH_389.19plu1811HigB/Plasmid_killer94.91NC_005126
2plu2265StbD91.04plu2264RelE93.41NC_005126
3plu3003VapI/HTH_XRE/HTH_XRE/HTH_392.81plu3002Plasmid_killer/HigB93.16NC_005126
4plu1931HTH_XRE/HTH_XRE/HTH_3/HipB84.84plu1932RelE/ParE92.9NC_005126
5plu0254RelB92.29plu0255RelE92.65NC_005126
6plu4283COG360986.81plu4282Plasmid_stabil/ParE92.3NC_005126
7plu4789-61.26plu4788VapI/HTH_XRE/HTH_XRE/HTH_388.9NC_005126
8plu3491COG1598/HTH_3/HTH_XRE/HTH_XRE83.73plu3492COG172487.97NC_005126
9plu4354COG1598/HTH_3/HTH_XRE/HTH_XRE84.63plu4353COG172487.93NC_005126
10plu0444HTH_XRE/HTH_XRE/HTH_3/HipB86.29plu0443HTH_XRE/HTH_XRE/HTH_3/HipB/VapI87.77NC_005126
11plu2367-67.55plu2368VapC/PIN86.17NC_005126
12plu2251ParE/Plasmid_stabil88.62plu2252COG159883.19NC_005126
13plu2270-63.19plu2269Plasmid_stabil/ParE79.49NC_005126
14plu2305-68.39plu2306Plasmid_stabil/ParE79.39NC_005126
15plu3959-67.68plu3960Plasmid_stabil/ParE79.39NC_005126
16plu3455-64.03plu3454HTH_XRE/HTH_3/HTH_XRE77.78NC_005126
17plu2371-60.35plu2372Plasmid_stabil/ParE/RelE77.69NC_005126
18plu2705-61.52plu2706HTH_XRE/HTH_XRE/HTH_377.37NC_005126
19plu3475-60.55plu3476HTH_3/HTH_XRE/HTH_XRE76.86NC_005126
20plu3707-67.97plu3706HTH_XRE/HTH_XRE/HTH_3/HipB/VapI/COG549974.02NC_005126
21plu3716-67.97plu3715HTH_XRE/HTH_XRE/HTH_3/HipB/VapI/COG549974.02NC_005126
22plu4465-64.03plu4466HTH_3/HTH_XRE/HTH_XRE/HipB73.57NC_005126
23plu0624-60.55plu0625ParE73.16NC_005126
24plu0809-64.64plu0808HTH_XRE/HTH_3/HTH_XRE/HipB/VapI72.98NC_005126
25plu2309-60.52plu2308HTH_XRE/HTH_XRE/HTH_372.92NC_005126
26plu2051-64.19plu2050COG1848/PIN70.76NC_005126
27plu2365PemK/MazF88plu2364-63.93NC_005126
28plu0443HTH_XRE/HTH_XRE/HTH_3/HipB/VapI87.77plu0442-63.84NC_005126
29plu3492COG172487.97plu3493-61.42NC_005126
30plu0285-60.16plu0284Plasmid_stabil/ParE/RelE75.82NC_005126
31plu3452-62.77plu3453HTH_XRE/HTH_XRE/HTH_3/HipB71.15NC_005126
32plu4466HTH_3/HTH_XRE/HTH_XRE/HipB73.57plu4467-61.29NC_005126
33plu2211-60.16plu2210Plasmid_stabil/ParE/RelE75.82NC_005126
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.