TADB
Rhodopseudomonas palustris CGA009 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5459213
Link to NCBI Taxonomy Browser by Tax_id :258594
 
# TA INFO in replicon: NC_005296
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 RPA0276 RPA0277 - 304243..304937 -/HEPN-MNT
2 2 RPA0827 RPA0826 - 923443..923993 -/COG2442-PIN
3 2 RPA0941 RPA0942 - 1040987..1041591 mazEF/XF1863-MazF
4 2 RPA1281 RPA1282 - 1400728..1401508 -/ArsR-COG3832
5 2 RPA1291 RPA1290 - 1409572..1410195 higBA/Xre-RelE
6 2 RPA1833 RPA1834 - 2060841..2061505 vapBC/PHD-PIN
7 2 RPA1992 RPA1993 - 2243485..2244155 vapBC/AbrB-PIN
8 2 RPA2139 RPA2140 - 2404371..2406058 -/Xre-COG3832
9 2 RPA2283 RPA2282 - 2585324..2585953 higBA/Xre-RelE
10 2 RPA2819 RPA2820 - 3194789..3195492 -/COG2442-PIN
11 2 RPA3108 RPA3109 - 3515232..3515751 -/RHH-COG2929
12 2 RPA3131 RPA3130 - 3538223..3538934 relBE */Xre-RelE
13 2 RPA3167 RPA3166 - 3573642..3574546 -/COG5642-COG5654
14 2 RPA3582 RPA3583 - 4047439..4048295 -/RHH-GNAT
15 2 RPA3608 RPA3607 - 4069978..4070630 vapBC/AbrB-PIN
16 2 RPA3826 RPA3827 - 4321678..4322361 higBA/RHH-RelE
17 2 RPA4130 RPA4129 - 4670965..4672205 -/Xre-COG2856
18 2 RPA4142 RPA4141 - 4684624..4685276 vapBC/RHH-PIN

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1RPA4141COG442386.27RPA4142PIN/VapC87.43NC_005296
2RPA3555-60.1RPA3556VapI72.73NC_005296
3RPA1290VapI/HTH_3/HTH_XRE/HTH_XRE/COG549989.19RPA1291Plasmid_killer/HigB92.53NC_005296
4RPA0942-67.93RPA0941MazF/PemK74.69NC_005296
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.