TADB
Nocardia farcinica IFM 10152 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 6021225
Link to NCBI Taxonomy Browser by Tax_id :247156
 
# TA INFO in replicon: NC_006361
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 nfa3330 nfa3320 - 344246..345524 -/Xre-DUF397
2 2 nfa4170 nfa4160 - 436086..436606 higBA/Xre-RelE
3 2 nfa4700 nfa4690 - 485753..486795 -/ArsR-COG3832
4 2 nfa4930 nfa4940 - 507996..509092 -/Xre-DUF397
5 2 nfa7690 nfa7700 - 840729..841270 mazEF/-
6 2 nfa10020 nfa10030 - 1107894..1108918 -/MerR-PIN
7 2 nfa19600 nfa19590 - 2133943..2134598 vapBC/PHD-PIN
8 2 nfa22970 nfa22980 - 2472970..2473784 -/ArsR-COG3832
9 2 nfa23730 nfa23740 - 2535406..2536085 vapBC/RHH-PIN
10 2 nfa26010 nfa26020 - 2770662..2771977 -/Xre-DUF397
11 2 nfa30860 nfa30870 - 3271695..3272992 -/ArsR-COG3832
12 2 nfa35510 nfa35500 - 3762031..3762692 -/ArsR-COG3832
13 2 nfa37010 nfa37000 - 3916524..3917389 -/ArsR-COG3832
14 2 nfa50940 nfa50950 - 5391748..5392556 -/ArsR-COG3832
15 2 nfa53240 nfa53250 - 5626724..5628275 hipBA */Xre-HipA
16 2 nfa56100 nfa56110 - 5951852..5952571 -/Xre-DUF397
17 2 nfa56410 nfa56420 - 5983560..5984806 -/Xre-DUF397

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1nfa2580HTH_XRE/HTH_3/HTH_XRE/HipB63.29nfa2570HTH_488.02NC_006361
2nfa53230-62.19nfa53240HipA85.18NC_006361
3nfa23720-62.64nfa23730COG1848/COG4113/PIN83.12NC_006361
4nfa54410-62.77nfa54400PemK77.62NC_006361
5nfa7700-66.22nfa7690MazF/PemK75.3NC_006361
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.