TADB
Thermococcus kodakarensis KOD1 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 2088737
Link to NCBI Taxonomy Browser by Tax_id :69014
 
# TA INFO in replicon: NC_006624
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 TK0016 TK0017 - 13392..14023 vapBC/AbrB-PIN
2 2 TK0063 TK0064 - 55059..56019 -/HEPN-MNT
3 2 TK0066 TK0065 - 56064..56709 vapBC/-
4 2 TK0128 TK0127 - 102394..102992 vapBC/-
5 2 TK0137 TK0138 - 111037..111643 vapBC/-
6 2 TK0176 TK0177 - 146633..147174 vapBC/-
7 2 TK0191 TK0192 - 160084..160748 vapBC/AbrB-PIN
8 2 TK0212 TK0213 - 180547..181292 vapBC */COG2886-PIN
9 2 TK0222 TK0221 - 189869..190625 -/HEPN-MNT
10 2 TK0334 TK0335 - 285109..285682 vapBC/AbrB-PIN
11 2 TK0341 TK0340 - 288155..289118 -/HEPN-MNT
12 2 TK0343 TK0344 - 289495..290110 vapBC/-
13 2 TK0371 TK0372 - 311827..312496 hicBA */HicB-HicA
14 2 TK0374 TK0373 - 312678..313311 vapBC/RHH-PIN
15 2 TK0456 TK0457 - 383849..384477 vapBC/AbrB-PIN
16 2 TK0542 TK0543 - 463818..464440 vapBC/-
17 2 TK0696 TK0695 - 601072..601835 vapBC/RHH-PIN
18 2 TK0734 TK0733 - 632437..633106 vapBC/AbrB-PIN
19 2 TK0791 TK0792 - 690067..690508 relBE/-
20 2 TK0889 TK0888 - 774854..775518 vapBC/AbrB-PIN
21 2 TK0910 TK0909 - 792470..793115 vapBC/AbrB-PIN
22 2 TK0918 TK0917 - 799611..800328 vapBC/COG2886-PIN
23 2 TK0962 TK0963 - 842315..843000 -/HEPN-MNT
24 2 TK0965 TK0966 - 844072..844519 relBE/-
25 2 TK0972 TK0973 - 848989..849598 vapBC/RHH-PIN
26 2 TK0998 TK0997 - 872843..873522 vapBC/AbrB-PIN
27 2 TK1014 TK1013 - 887282..887918 vapBC/AbrB-PIN
28 2 TK1027 TK1028 - 903459..904113 vapBC/AbrB-PIN
29 2 TK1069 TK1068 - 940211..940755 mazEF/-
30 2 TK1073 TK1072 - 942170..942863 -/HEPN-MNT
31 2 TK1075 TK1076 - 943303..943724 vapBC */AbrB-PIN
32 2 TK1128 TK1127 - 986796..987472 -/HEPN-MNT
33 2 TK1185 TK1184 - 1041578..1042329 vapBC/-
34 2 TK1256 TK1255 - 1099183..1099853 vapBC/-
35 2 TK1290 TK1291 - 1131943..1132596 vapBC/AbrB-PIN
36 2 TK1476 TK1475 - 1306186..1306979 -/HEPN-MNT
37 2 TK1510 TK1511 - 1331506..1331938 hicBA/HicB-HicA
38 2 TK1644 TK1645 - 1444332..1444986 vapBC/-
39 2 TK1709 TK1710 - 1500738..1501566 -/HEPN-MNT
40 2 TK1751 TK1752 - 1551448..1552019 vapBC/RHH-PIN
41 2 TK1763 TK1762 - 1563759..1564414 vapBC/RHH-PIN
42 2 TK1816 TK1815 - 1624796..1625192 mazEF/RHH-MazF
43 2 TK1995 TK1996 - 1796925..1797480 vapBC/-
44 2 TK2005 TK2006 - 1804415..1805217 vapBC/-
45 2 TK2067 TK2068 - 1859508..1860129 vapBC/-
46 2 TK2155 TK2154 - 1932670..1933415 vapBC/COG2886-PIN
47 2 TK2228 TK2229 - 2018159..2018766 vapBC/AbrB-PIN
48 2 TK2262 TK2261 - 2051024..2051658 vapBC/AbrB-PIN
49 2 TK2306 TK2305 - 2088009..2088737 vapBC */COG2886-PIN

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1TK1338-60.94TK1339HTH_XRE/HTH_XRE/HTH_3/VapI/HipB73.42NC_006624
2TK0973-67.68TK0972COG4113/PIN/COG184871NC_006624
3TK0792-61.71TK0791RelE80.79NC_006624
4TK0858-63.23TK0859COG411370.74NC_006624
5TK0859COG411370.74TK0860-63.84NC_006624
6TK1339HTH_XRE/HTH_XRE/HTH_3/VapI/HipB73.42TK1340-60.97NC_006624
7TK0138-60.77TK0137COG4113/COG1848/PIN70.5NC_006624
8TK0335-62TK0334VapC/PIN/COG1848/COG411375.45NC_006624
9TK0177-67.1TK0176VapC/PIN73.61NC_006624
10TK2066-60.03TK2067COG1848/PIN/VapC72.05NC_006624
11TK0192-63.81TK0191COG1848/COG4113/PIN/VapC71.18NC_006624
12TK0966-61.71TK0965RelE80.45NC_006624
13TK1645-64.19TK1644COG1848/PIN/VapC71.45NC_006624
14TK1994-62.74TK1995VapC/PIN74.3NC_006624
15TK0372-60.94TK0371COG172474.68NC_006624
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.