TADB
Xanthomonas oryzae KACC10331 chromosome

# GENOME INFO
Genome size (bp) : 4941439
Link to NCBI Taxonomy Browser by Tax_id :291331
 
# TA INFO in replicon: NC_006834
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 XOO0163 XOO0164 - 162013..162716 parDE/PHD-RelE
2 2 XOO2863 XOO2864 - 3073369..3074048 vapBC/AbrB-PIN
3 2 XOO3444 XOO3443 - 3679553..3680284 phd-doc/AbrB-Fic
4 2 XOO3459 XOO3460 - 3698383..3699039 relBE/RHH-RelE
5 2 XOO3465 YXOOp02 - 3706900..3707478 RelBE or parDE */RHH-RelE
6 2 XOO4468 XOO4467 - 4756704..4757293 higBA/Xre-RelE
7 2 XOO4507 XOO4506 - 4805240..4807134 hipBA */Xre-HipA

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1XOO4506HTH_XRE/HTH_XRE/HTH_3/HipB/VapI63.38XOO4507HipA85.88NC_006834
2YXOOp02-60.32XOO3465Plasmid_stabil/ParE75.48NC_006834
3XOO4467VapI/HTH_3/HTH_XRE/HTH_XRE/HipB88.48XOO4468HigB/Plasmid_killer94.38NC_006834
4XOO2864AbrB/SpoVT_AbrB/MazE85.99XOO2863VapC/PIN/COG184887.48NC_006834
5XOO3460-61.84XOO3459ParE/Plasmid_stabil75.57NC_006834
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.