TADB
Nitrosococcus oceani ATCC 19707 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 3481691
Link to NCBI Taxonomy Browser by Tax_id :323261
 
# TA INFO in replicon: NC_007484
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Noc_0083 Noc_0084 - 88891..89413 -/RHH-COG2929
2 2 Noc_0085 Noc_0086 - 89460..89982 -/RHH-COG2929
3 2 Noc_0284 Noc_0283 - 312416..313049 relBE */Xre-RelE
4 2 Noc_0398 Noc_0399 - 441899..442400 RelBE or parDE */RHH-RelE
5 2 Noc_0410 Noc_0411 - 453624..454110 -/RHH-COG2929
6 2 Noc_0413 Noc_0414 - 455465..456141 vapBC */RHH-PIN
7 2 Noc_0416 Noc_0415 - 456683..457426 relBE */Xre-RelE
8 2 Noc_0433 Noc_0434 - 472856..473394 relBE or parDE */PHD-RelE
9 2 Noc_0438 Noc_0437 - 475351..475922 relBE */Xre-RelE
10 2 Noc_0440 Noc_0441 - 477642..478276 vapBC */AbrB-PIN
11 2 Noc_0444 Noc_0445 - 479999..480521 RelBE or parDE */RHH-RelE
12 2 Noc_0450 Noc_0449 - 485289..485884 relBE */Xre-RelE
13 2 Noc_0570 Noc_0571 - 617076..617688 relBE */Xre-RelE
14 2 Noc_0635 Noc_0634 - 681387..682477 -/COG5642-COG5654
15 2 Noc_1098 Noc_1099 - 1204583..1205165 -/RHH-COG2929
16 2 Noc_1100 Noc_1101 - 1205401..1205923 relBE or parDE */PHD-RelE
17 2 Noc_1109 Noc_1108 - 1211146..1211861 hicBA */HicB-HicA
18 2 Noc_1203 Noc_1202 - 1310063..1310697 -/HEPN-MNT
19 2 Noc_1461 Noc_1462 - 1619598..1620234 vapBC */RHH-PIN
20 2 Noc_1522 Noc_1521 - 1686789..1687402 vapBC */RHH-PIN
21 2 Noc_1568 Noc_1567 - 1743105..1743670 mazEF, ccd or relBE */RHH-MazF
22 2 Noc_2071 Noc_2072 - 2381580..2382157 RelBE or parDE */RHH-RelE
23 2 Noc_2205 Noc_2206 - 2549375..2550053 vapBC */AbrB-PIN
24 2 Noc_2241 Noc_2242 - 2587933..2588384 hicBA */HicB-HicA
25 2 Noc_2535 Noc_2536 - 2887957..2888711 -/HEPN-MNT
26 2 Noc_2539 Noc_2538 - 2889675..2890150 vapBC */AbrB-PIN
27 2 Noc_2544 Noc_2542 - 2891872..2894288 vapBC */Xre-PIN
28 2 Noc_2744 Noc_2743 - 3112724..3113319 hicBA */HicB-HicA
29 2 Noc_2762 Noc_2763 - 3134886..3135479 relBE */Xre-RelE
30 2 Noc_2907 Noc_2908 - 3286796..3287877 -/Xre-COG5654
31 2 Noc_2931 Noc_2930 - 3315526..3317113 hipBA */Xre-HipA
32 2 Noc_2945 Noc_2944 - 3332276..3333054 relBE */Xre-RelE

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Noc_0437VapI/HTH_XRE/HTH_3/HTH_XRE92.06Noc_0438Plasmid_killer/HigB93.42NC_007484
2Noc_0571VapI/HTH_XRE/HTH_XRE/HTH_3/HipB86.28Noc_0570Plasmid_killer/HigB93.36NC_007484
3Noc_0417VapI/HTH_XRE/HTH_XRE/HTH_3/COG5499/HipB90.41Noc_0416HigB/Plasmid_killer94.11NC_007484
4Noc_2763VapI/HTH_XRE/HTH_XRE/HTH_391.55Noc_2762HigB/Plasmid_killer93.68NC_007484
5Noc_0443-61.26Noc_0444ParE/Plasmid_stabil92.84NC_007484
6Noc_2544COG1848/PIN/COG411382.68Noc_2545AbrB/SpoVT_AbrB90.92NC_007484
7Noc_0525COG184882.72Noc_0524HTH_487.36NC_007484
8Noc_2206AbrB/SpoVT_AbrB84.9Noc_2205PIN/COG1848/VapC85.76NC_007484
9Noc_0434-63.06Noc_0433RelE80.58NC_007484
10Noc_2072-67.97Noc_2071ParE/Plasmid_stabil77.73NC_007484
11Noc_1567-66.22Noc_1568PemK/MazF75.66NC_007484
12Noc_0414-63.1Noc_0413PIN/VapC75.09NC_007484
13Noc_1521-63.93Noc_1522VapC/PIN/COG184874.9NC_007484
14Noc_1158-63.9Noc_1157COG1598/HTH_4/COG360973.95NC_007484
15Noc_0568-67.93Noc_0569HTH_XRE/HTH_XRE/HTH_373.4NC_007484
16Noc_1462-64.32Noc_1461COG1848/PIN/COG4113/VapC71.86NC_007484
17Noc_0571VapI/HTH_XRE/HTH_XRE/HTH_3/HipB86.28Noc_0572-62.77NC_007484
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.