TADB
Shigella dysenteriae Sd197 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 4369232
Link to NCBI Taxonomy Browser by Tax_id :300267
 
# TA INFO in replicon: NC_007606
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 SDY_0073 SDY_0072 - 68949..69499 mazEF, ccd or relBE */RHH-MazF
2 2 SDY_0251 SDY_0252 - 250067..250608 RelBE or parDE */RHH-RelE
3 2 SDY_2200 SDY_2199 - 2001776..2002277 higBA (relBE) */COG5606-RelE
4 2 SDY_2258 SDY_2257 - 2054303..2054852 RelBE or parDE */RHH-RelE
5 2 SDY_2999 SDY_3000 - 2766731..2767314 mazEF */AbrB-MazF
6 2 SDY_3523 SDY_3524 - 3257903..3258662 -/YhfG-Fic
7 2 SDY_3656 SDY_3657 - 3382863..3383623 -/RHH-GNAT
8 2 SDY_4142 SDY_4143 - 3875292..3875958 relBE */Xre-RelE
9 2 SDY_4461 SDY_4460 - 4176037..4176638 mazEF */AbrB-MazF

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1SDY_2596HTH_XRE/HTH_XRE/HTH_382.13SDY_2597HTH_XRE/HTH_XRE/HTH_3/HipB82.89NC_007606
2SDY_2257COG360990.04SDY_2258ParE/Plasmid_stabil91.57NC_007606
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.