TADB
Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 4352825
Link to NCBI Taxonomy Browser by Tax_id :269796
 
# TA INFO in replicon: NC_007643
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Rru_A0091 Rru_A0090 - 104817..105497 vapBC */PHD-PIN
2 2 Rru_A0402 Rru_A0401 - 478564..479857 -/Xre-COG5654
3 2 Rru_A0457 Rru_A0456 - 536569..537154 relBE */Xre-RelE
4 2 Rru_A0537 Rru_A0536 - 631118..633422 -/Xre-COG2856
5 2 Rru_A0699 Rru_A0700 - 829201..829766 RelBE or parDE */RHH-RelE
6 2 Rru_A0783 Rru_A0782 - 934549..935452 -/Xre-COG5654
7 2 Rru_A0814 Rru_A0815 - 969912..970804 -/COG5642-COG5654
8 2 Rru_A0922 Rru_A0921 - 1095989..1096658 relBE */Xre-RelE
9 2 Rru_A0976 Rru_A0977 - 1162666..1163294 mazEF, ccd or relBE */RHH-MazF
10 2 Rru_A1062 Rru_A1061 - 1254632..1255206 vapBC */RHH-PIN
11 2 Rru_A1064 Rru_A1065 - 1255763..1256376 relBE */Xre-RelE
12 2 Rru_A1246 Rru_A1247 - 1467698..1469312 hipBA */Xre-HipA
13 2 Rru_A1415 Rru_A1416 - 1672902..1673614 vapBC */RHH-PIN
14 2 Rru_A1512 Rru_A1513 - 1786025..1786719 -/HEPN-MNT
15 2 Rru_A1649 Rru_A1648 - 1940050..1940680 -/RHH-GNAT
16 2 Rru_A1709 Rru_A1710 - 2002802..2003555 vapBC */PHD-PIN
17 2 Rru_A1739 Rru_A1738 - 2030547..2031200 hicBA */HicB-HicA
18 2 Rru_A1801 Rru_A1800 - 2094653..2095352 -/PHD-MazFn
19 2 Rru_A1974 Rru_A1975 - 2284227..2285836 hipBA */Xre-HipA
20 2 Rru_A2020 Rru_A2019 - 2332700..2333294 relBE */Xre-RelE
21 2 Rru_A2376 Rru_A2377 - 2769104..2769660 RelBE or parDE */RHH-RelE
22 2 Rru_A2429 Rru_A2430 - 2828855..2829594 relBE */Xre-RelE
23 2 Rru_A2443 Rru_A2442 - 2841918..2843485 hipBA */Xre-HipA
24 2 Rru_A2481 Rru_A2482 - 2884349..2885027 relBE */Xre-RelE
25 2 Rru_A2778 Rru_A2779 - 3212775..3213407 relBE */Xre-RelE
26 2 Rru_A2891 Rru_A2890 - 3334110..3335254 -/COG5642-COG5654
27 2 Rru_A3069 Rru_A3068 - 3533712..3534282 relBE */Xre-RelE
28 2 Rru_A3081 Rru_A3082 - 3547187..3547765 relBE */Xre-RelE
29 2 Rru_A3196 Rru_A3195 - 3684195..3684672 RelBE or parDE */RHH-RelE
30 2 Rru_A3224 Rru_A3225 - 3718643..3719753 -/COG5642-COG5654
31 2 Rru_A3239 Rru_A3240 - 3735758..3736314 RelBE or parDE */RHH-RelE
32 2 Rru_A3410 Rru_A3411 - 3927542..3928218 relBE */Xre-RelE
33 2 Rru_A3552 Rru_A3553 - 4092189..4092580 mazEF, ccd or relBE */RHH-MazF
34 2 Rru_A3736 Rru_A3735 - 4285412..4286337 -/COG5642-COG5654

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Rru_A2377COG360986.4Rru_A2376Plasmid_stabil/ParE89.81NC_007643
2Rru_A2430VapI/HTH_XRE/HTH_XRE/HTH_3/HipB87.13Rru_A2429Plasmid_killer/HigB92.62NC_007643
3Rru_A1416HicB/HicB82.19Rru_A1415VapC85.97NC_007643
4Rru_A0006VapI/HTH_3/HTH_XRE/HTH_XRE/HipB63.98Rru_A0005Plasmid_killer/HigB73.18NC_007643
5Rru_A1062VapC/PIN/COG184887.09Rru_A1063-61.1NC_007643
6Rru_A1065VapI/HTH_3/HTH_XRE/HTH_XRE/HipB90.63Rru_A1064HigB/Plasmid_killer94.49NC_007643
7Rru_A0977HicB/HicB80.1Rru_A0976MazF/PemK88.27NC_007643
8Rru_A3195HTH_490.24Rru_A3196RelE93.83NC_007643
9Rru_A2779VapI/HTH_3/HTH_XRE/HTH_XRE/COG5499/HipB88.26Rru_A2778Plasmid_killer/HigB92.53NC_007643
10Rru_A3240COG3609/HTH_488.71Rru_A3239ParE/Plasmid_stabil91.98NC_007643
11Rru_A2019VapI/HTH_XRE89.12Rru_A2020HigB/Plasmid_killer93.63NC_007643
12Rru_A3068VapI/HTH_XRE/HTH_XRE/HTH_393.29Rru_A3069HigB/Plasmid_killer93.36NC_007643
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.