TADB
Rhodopseudomonas palustris HaA2 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5331656
Link to NCBI Taxonomy Browser by Tax_id :316058
 
# TA INFO in replicon: NC_007778
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 RPB_0355 RPB_0354 - 397568..398216 vapBC */PHD-PIN
2 2 RPB_0367 RPB_0368 - 408479..409601 -/COG5642-COG5654
3 2 RPB_0374 RPB_0375 - 414883..415639 -/HEPN-MNT
4 2 RPB_0576 RPB_0575 - 647560..648257 vapBC */PHD-PIN
5 2 RPB_0687 RPB_0688 - 771461..773031 hipBA */Xre-HipA
6 2 RPB_1433 RPB_1432 - 1622689..1623369 phd-doc */AbrB-Fic
7 2 RPB_1592 RPB_1593 - 1795923..1796504 vapBC */RHH-PIN
8 2 RPB_1920 RPB_1921 - 2194241..2194893 vapBC */AbrB-PIN
9 2 RPB_2021 RPB_2020 - 2298946..2299439 hicBA */HicB-HicA
10 2 RPB_2119 RPB_2118 - 2410094..2410800 vapBC */RHH-PIN
11 2 RPB_2332 RPB_2333 - 2680336..2681037 vapBC */RHH-PIN
12 2 RPB_2437 RPB_2436 - 2792629..2793148 -/RHH-COG2929
13 2 RPB_2527 RPB_2528 - 2885745..2886235 hicBA */HicB-HicA
14 2 RPB_3499 RPB_3498 - 4003590..4004136 -/RHH-COG2929
15 2 RPB_3539 RPB_3540 - 4051464..4052123 -/HEPN-MNT
16 2 RPB_3729 RPB_3730 - 4264838..4265472 vapBC */AbrB-PIN
17 2 RPB_3765 RPB_3764 - 4299847..4300342 -/RHH-COG2929
18 2 RPB_4129 RPB_4130 - 4703035..4703519 hicBA */HicB-HicA
19 2 RPB_4147 RPB_4148 - 4724702..4725297 relBE */Xre-RelE
20 2 RPB_4184 RPB_4183 - 4757608..4758393 -/COG5642-COG5654
21 2 RPB_4319 RPB_4320 - 4903938..4904338 hicBA/-
22 2 RPB_4437 RPB_4438 - 5026759..5027486 vapBC */AbrB-PIN
23 2 RPB_4470 RPB_4469 - 5060552..5061147 mazEF */XF1863-MazF
24 2 RPB_4579 RPB_4580 - 5176230..5176698 hicBA */HicB-HicA

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1RPB_2118-67.68RPB_2119COG4113/PIN/COG184870.11NC_007778
2RPB_4469-62.52RPB_4470MazF/PemK74.91NC_007778
3RPB_1921AbrB/SpoVT_AbrB86.29RPB_1920VapC/PIN/COG184887.8NC_007778
4RPB_4438VagC/SpoVT_AbrB88.17RPB_4437VapC/PIN/COG4113/COG184888.8NC_007778
5RPB_2528COG159881.52RPB_2527COG172482.55NC_007778
6RPB_4200HTH_XRE/HTH_XRE/HTH_3/HipB/VapI64.58RPB_4201RelB86.61NC_007778
7RPB_1467-66.68RPB_1466ParE/Plasmid_stabil77.71NC_007778
8RPB_4148VapI/HTH_3/HTH_XRE/HTH_XRE/COG549991.16RPB_4147HigB/Plasmid_killer93.9NC_007778
9RPB_4580COG159885RPB_4579COG172485.77NC_007778
10RPB_3828-60.35RPB_3827COG1598/HTH_487.24NC_007778
11RPB_1410-67.55RPB_1409ParE/Plasmid_stabil78.1NC_007778
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.