TADB
Rhodopseudomonas palustris BisB18 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5513844
Link to NCBI Taxonomy Browser by Tax_id :316056
 
# TA INFO in replicon: NC_007925
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 RPC_0027 RPC_0028 - 33376..33913 relBE or parDE */PHD-RelE
2 2 RPC_0159 RPC_0160 - 176084..176666 RelBE or parDE */RHH-RelE
3 2 RPC_0232 RPC_0231 - 246905..247616 relBE */Xre-RelE
4 2 RPC_0273 RPC_0274 - 291034..291664 -/HEPN-MNT
5 2 RPC_0434 RPC_0435 - 468205..469113 -/Xre-COG5654
6 2 RPC_0586 RPC_0587 - 640148..640710 mazEF */XF1863-MazF
7 2 RPC_0722 RPC_0723 - 789706..790637 vapBC */RHH-PIN
8 2 RPC_0805 RPC_0804 - 889141..889799 vapBC */RHH-PIN
9 2 RPC_0821 RPC_0822 - 904506..905086 mazEF */XF1863-MazF
10 2 RPC_0973 RPC_0972 - 1068596..1069029 hicBA */HicB-HicA
11 2 RPC_1257 RPC_1256 - 1373465..1374081 relBE */Xre-RelE
12 2 RPC_1344 RPC_1343 - 1465981..1466633 vapBC */RHH-PIN
13 2 RPC_1376 RPC_1377 - 1501861..1502427 RelBE or parDE */RHH-RelE
14 2 RPC_1397 RPC_1396 - 1524952..1525737 -/COG5642-COG5654
15 2 RPC_1582 RPC_1581 - 1719840..1720450 higBA (relBE) */COG5606-RelE
16 2 RPC_1608 RPC_1609 - 1741915..1742765 -/RHH-GNAT
17 2 RPC_1757 RPC_1756 - 1909930..1910588 -/HEPN-MNT
18 2 RPC_1758 RPC_1759 - 1910657..1911342 vapBC */PHD-PIN
19 2 RPC_2132 RPC_2133 - 2331856..2332511 vapBC */AbrB-PIN
20 2 RPC_2135 RPC_2134 - 2332588..2333131 -/RHH-COG2929
21 2 RPC_2216 RPC_2215 - 2415054..2415615 RelBE or parDE */RHH-RelE
22 2 RPC_2249 RPC_2250 - 2453522..2454056 -/RHH-COG2929
23 2 RPC_2263 RPC_2262 - 2463577..2464099 -/RHH-COG2929
24 2 RPC_2268 RPC_2267 - 2468584..2469418 vapBC */RHH-PIN
25 2 RPC_2332 RPC_2331 - 2534716..2535335 RelBE or parDE */RHH-RelE
26 2 RPC_2435 RPC_2434 - 2636147..2636748 vapBC */RHH-PIN
27 2 RPC_2536 RPC_2537 - 2745929..2746695 relBE */Xre-RelE
28 2 RPC_2830 RPC_2829 - 3072522..3073154 relBE */Xre-RelE
29 2 RPC_3073 RPC_3072 - 3404973..3405641 relBE */Xre-RelE
30 2 RPC_3186 RPC_3187 - 3527825..3528401 relBE */Xre-RelE
31 2 RPC_3250 RPC_3251 - 3599665..3600382 mazEF */AbrB-MazF
32 2 RPC_3346 RPC_3345 - 3702022..3702746 vapBC */PHD-PIN
33 2 RPC_3551 RPC_3552 - 3949711..3950496 -/RHH-GNAT
34 2 RPC_3693 RPC_3694 - 4117060..4117733 vapBC */AbrB-PIN
35 2 RPC_3924 RPC_3925 - 4356627..4357762 -/COG5642-COG5654
36 2 RPC_3944 RPC_3943 - 4393836..4394464 vapBC */RHH-PIN
37 2 RPC_3971 RPC_3972 - 4422010..4422640 phd-doc */AbrB-Fic
38 2 RPC_4140 RPC_4141 - 4603418..4604014 relBE */Xre-RelE
39 2 RPC_4145 RPC_4144 - 4604785..4606324 hipBA */Xre-HipA
40 2 RPC_4151 RPC_4150 - 4610782..4611449 vapBC */RHH-PIN
41 2 RPC_4241 RPC_4242 - 4722996..4723690 relBE */Xre-RelE
42 2 RPC_4369 RPC_4370 - 4872267..4872843 relBE */Xre-RelE
43 2 RPC_4423 RPC_4424 - 4931280..4932332 -/MerR-PIN
44 2 RPC_4746 RPC_4745 - 5310655..5311272 relBE */Xre-RelE
45 2 RPC_4755 RPC_4756 - 5320810..5321480 relBE */Xre-RelE
46 2 RPC_4772 RPC_4771 - 5333254..5333819 mazEF */XF1863-MazF
47 2 RPC_4800 RPC_4801 - 5359945..5360522 vapBC */RHH-PIN
48 2 RPC_4901 RPC_4902 - 5471035..5471804 -/HEPN-MNT

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1RPC_4370VapI/HTH_XRE/HTH_3/HTH_XRE/HipB/COG549965.42RPC_4369HigB/Plasmid_killer94NC_007925
2RPC_0587-65.77RPC_0586MazF/PemK74.37NC_007925
3RPC_3251MazE/SpoVT_AbrB87.76RPC_3250PemK/MazF88.22NC_007925
4RPC_1256VapI/HTH_3/HTH_XRE/HTH_XRE90.28RPC_1257HigB/Plasmid_killer94.49NC_007925
5RPC_3072HTH_XRE/HTH_3/HTH_XRE/HipB/COG5499/VapI87.96RPC_3073RelE92.21NC_007925
6RPC_4745VapI/HTH_XRE/HTH_XRE/HTH_389.06RPC_4746Plasmid_killer/HigB93.17NC_007925
7RPC_0804-68.39RPC_0805VapC/PIN/COG184873.5NC_007925
8RPC_2133AbrB/SpoVT_AbrB89.24RPC_2134-67.71NC_007925
9RPC_4801HTH_486.9RPC_4802Plasmid_stabil/ParE93.21NC_007925
10RPC_2215COG360990.37RPC_2216ParE/Plasmid_stabil90.91NC_007925
11RPC_3970-67.1RPC_3971DOC/Doc89.86NC_007925
12RPC_3694AbrB/MazE/SpoVT_AbrB87.23RPC_3695-63.23NC_007925
13RPC_3280COG159885.35RPC_3281COG159888.26NC_007925
14RPC_3175-60.32RPC_3174HTH_3/HTH_XRE/HTH_XRE/HipB/VapI73.65NC_007925
15RPC_3725-63.81RPC_3724COG1848/PIN70.83NC_007925
16RPC_0822-67.68RPC_0821MazF/PemK74.71NC_007925
17RPC_2331-66.68RPC_2332ParE/Plasmid_stabil74.86NC_007925
18RPC_4129-64.87RPC_4130ParE/Plasmid_stabil77.02NC_007925
19RPC_2267-62.42RPC_2268PIN/VapC/COG184873.57NC_007925
20RPC_4771-66.68RPC_4772MazF/PemK74.74NC_007925
21RPC_1758COG4113/PIN84.18RPC_1757-62.61NC_007925
22RPC_4799-61.29RPC_4800VapC/PIN85.73NC_007925
23RPC_0160COG360985.5RPC_0159Plasmid_stabil/ParE90.96NC_007925
24RPC_4141VapI/HTH_3/HTH_XRE/HTH_XRE/COG5499/HipB91.25RPC_4140HigB/Plasmid_killer93.79NC_007925
25RPC_2829VapI/HTH_XRE/HTH_XRE/HTH_3/COG549988.27RPC_2830Plasmid_killer/HigB92.54NC_007925
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.