TADB
Rhodopseudomonas palustris BisB5 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 4892717
Link to NCBI Taxonomy Browser by Tax_id :316057
 
# TA INFO in replicon: NC_007958
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 RPD_0030 RPD_0031 - 37697..38798 -/Xre-COG5654
2 2 RPD_0376 RPD_0375 - 441249..441811 mazEF */XF1863-MazF
3 2 RPD_0447 RPD_0446 - 515319..516000 vapBC */AbrB-PIN
4 2 RPD_0538 RPD_0537 - 609963..610605 vapBC */RHH-PIN
5 2 RPD_0573 RPD_0572 - 646116..646689 RelBE or parDE */RHH-RelE
6 2 RPD_1413 RPD_1412 - 1580008..1580657 phd-doc */AbrB-Fic
7 2 RPD_1445 RPD_1446 - 1614258..1614907 vapBC */RHH-PIN
8 2 RPD_1602 RPD_1603 - 1797887..1798551 vapBC */PHD-PIN
9 2 RPD_1926 RPD_1925 - 2162854..2163514 -/HEPN-MNT
10 2 RPD_2061 RPD_2062 - 2310238..2310938 vapBC */AbrB-PIN
11 2 RPD_2200 RPD_2201 - 2459778..2461418 -/Xre-COG3832
12 2 RPD_2296 RPD_2295 - 2560110..2561350 -/Xre-COG2856
13 2 RPD_2669 RPD_2670 - 2983595..2984226 vapBC */AbrB-PIN
14 2 RPD_3079 RPD_3078 - 3426110..3426797 vapBC */PHD-PIN
15 2 RPD_3138 RPD_3137 - 3490783..3491473 vapBC */RHH-PIN
16 2 RPD_3501 RPD_3502 - 3892172..3892845 vapBC */AbrB-PIN
17 2 RPD_3974 RPD_3975 - 4424598..4425204 -/RHH-COG2929
18 2 RPD_3982 RPD_3981 - 4428912..4429689 -/ArsR-COG3832
19 2 RPD_4183 RPD_4182 - 4650983..4651682 relBE */Xre-RelE
20 2 RPD_4316 RPD_4315 - 4783332..4783933 mazEF */XF1863-MazF

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1RPD_0446SpoVT_AbrB/AbrB/MazE85.15RPD_0447VapC/PIN88.08NC_007958
2RPD_1603StbD/Phd85.96RPD_1602VapC/PIN/COG184887.94NC_007958
3RPD_4182HTH_XRE/HTH_XRE/HTH_3/HipB62.95RPD_4183RelE86.41NC_007958
4RPD_1390-68.13RPD_1389ParE/Plasmid_stabil78.64NC_007958
5RPD_0375-66.22RPD_0376MazF/PemK74.34NC_007958
6RPD_2225-62.71RPD_2226HTH_3/HTH_XRE/HTH_XRE/HipB74.26NC_007958
7RPD_3502AbrB/MazE/SpoVT_AbrB86.75RPD_3503-64.64NC_007958
8RPD_4315-67.68RPD_4316MazF/PemK74.92NC_007958
9RPD_4340-67.97RPD_4341ParE/Plasmid_stabil76.08NC_007958
10RPD_3988-66.68RPD_3989HTH_XRE/HTH_XRE/HTH_372.33NC_007958
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.