TADB
Nitrobacter hamburgensis X14 plasmid 3, complete sequence. plasmid 3

# GENOME INFO
Genome size (bp) : 121408
Link to NCBI Taxonomy Browser by Tax_id :323097
 
# TA INFO in replicon: NC_007961
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Nham_4554 Nham_4555 - 11687..12368 RelBE or parDE */RHH-RelE
2 2 Nham_4575 Nham_4574 - 30442..31160 vapBC */RHH-PIN
3 2 Nham_4577 Nham_4578 - 32241..32881 vapBC */RHH-PIN
4 2 Nham_4587 Nham_4586 - 40050..40843 -/RHH-GNAT
5 2 Nham_4639 Nham_4640 - 90404..91245 relBE */AbrB-RelE
6 2 Nham_4658 Nham_4657 - 108321..109057 ygiT-mqsR (relBE) */Xre-YgiU
7 2 Nham_4667 Nham_4666 - 114944..115557 RelBE or parDE */RHH-RelE

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Nham_4552-62.64Nham_4553PIN/COG1848/COG4113/VapC72NC_007961
2Nham_4574-63.84Nham_4575VapC/PIN/COG184874.36NC_007961
3Nham_4666RelB63.66Nham_4667ParE/Plasmid_stabil89.22NC_007961
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.