TADB
Candidatus Koribacter versatilis Ellin345 chromosome, complete chromosome

# GENOME INFO
Genome size (bp) : 5650368
Link to NCBI Taxonomy Browser by Tax_id :204669
 
# TA INFO in replicon: NC_008009
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Acid345_0156 Acid345_0155 - 163664..165216 hipBA */Xre-HipA
2 2 Acid345_0226 Acid345_0227 - 240500..241380 -/Xre-COG2856
3 2 Acid345_0993 Acid345_0994 - 1258480..1259111 vapBC */PHD-PIN
4 2 Acid345_1121 Acid345_1122 - 1397357..1399176 -/Xre-COG2856
5 2 Acid345_1126 Acid345_1125 - 1403598..1404235 RelBE or parDE */RHH-RelE
6 2 Acid345_1397 Acid345_1398 - 1697168..1697862 vapBC */PHD-PIN
7 2 Acid345_1968 Acid345_1969 - 2361867..2362515 -/HEPN-MNT
8 2 Acid345_2089 Acid345_2090 - 2503448..2504050 RelBE or parDE */RHH-RelE
9 2 Acid345_2426 Acid345_2427 - 2865831..2867443 hipBA */Xre-HipA
10 2 Acid345_2636 Acid345_2637 - 3108155..3108825 vapBC */PHD-PIN
11 2 Acid345_2885 Acid345_2884 - 3426927..3427492 RelBE or parDE */RHH-RelE
12 2 Acid345_3425 Acid345_3424 - 4045634..4046257 relBE */Xre-RelE
13 2 Acid345_3558 Acid345_3557 - 4207587..4208109 RelBE or parDE */RHH-RelE
14 2 Acid345_3586 Acid345_3587 - 4238897..4239466 relBE */Xre-RelE
15 2 Acid345_3952 Acid345_3951 - 4675335..4676166 -/ArsR-COG3832
16 2 Acid345_4108 Acid345_4109 - 4864687..4865305 phd-doc */AbrB-Fic
17 2 Acid345_4147 Acid345_4148 - 4907241..4908016 ygiT-mqsR (relBE) */Xre-YgiU
18 2 Acid345_4435 Acid345_4434 - 5266208..5266895 vapBC */PHD-PIN
19 2 Acid345_4451 Acid345_4450 - 5283272..5283995 higBA (relBE) */COG5606-RelE
20 2 Acid345_4571 Acid345_4570 - 5417288..5418887 hipBA */Xre-HipA
21 2 Acid345_4594 Acid345_4595 - 5441063..5441859 -/ArsR-COG3832
22 2 Acid345_4624 Acid345_4623 - 5478690..5479282 mazEF */AbrB-MazF
23 2 Acid345_4672 Acid345_4673 - 5528727..5529501 vapBC */AbrB-PIN
24 2 Acid345_4779 Acid345_4780 - 5647767..5648289 RelBE or parDE */RHH-RelE

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Acid345_3424VapI/HTH_XRE/HTH_XRE/HTH_3/COG549992.33Acid345_3425HigB/Plasmid_killer93NC_008009
2Acid345_3557HTH_463.88Acid345_3558Plasmid_stabil/ParE92.27NC_008009
3Acid345_4780HTH_486.28Acid345_4779Plasmid_stabil/ParE89.96NC_008009
4Acid345_0154-60.03Acid345_0155HTH_XRE/HTH_XRE/HTH_3/HipB/VapI89.04NC_008009
5Acid345_2637StbD/Phd64.54Acid345_2636PIN/COG1848/VapC87.08NC_008009
6Acid345_0155HTH_XRE/HTH_XRE/HTH_3/HipB/VapI89.04Acid345_0156HipA86.09NC_008009
7Acid345_4510-60.97Acid345_4511HTH_XRE/HTH_XRE/HTH_3/HipB/VapI78.98NC_008009
8Acid345_1125-60.03Acid345_1126ParE/Plasmid_stabil78.77NC_008009
9Acid345_2090RelB63.61Acid345_2089ParE/Plasmid_stabil78.66NC_008009
10Acid345_1439-60.45Acid345_1440HTH_XRE/HTH_XRE/HTH_3/HipB/VapI75.82NC_008009
11Acid345_4780HTH_486.28Acid345_4781-63.03NC_008009
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.