TADB
Sphingopyxis alaskensis RB2256 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 3345170
Link to NCBI Taxonomy Browser by Tax_id :317655
 
# TA INFO in replicon: NC_008048
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Sala_0273 Sala_0272 - 271136..271712 relBE */Xre-RelE
2 2 Sala_0435 Sala_0436 - 443726..444870 -/Xre-COG5654
3 2 Sala_0579 Sala_0580 - 589863..590419 RelBE or parDE */RHH-RelE
4 2 Sala_0697 Sala_0696 - 703112..703920 vapBC */RHH-PIN
5 2 Sala_0968 Sala_0967 - 993446..994434 -/ArsR-COG3832
6 2 Sala_1801 Sala_1802 - 1897539..1898346 -/ArsR-COG3832
7 2 Sala_2086 Sala_2087 - 2192298..2192916 relBE */Xre-RelE
8 2 Sala_2593 Sala_2594 - 2734387..2735018 vapBC */AbrB-PIN
9 2 Sala_2597 Sala_2596 - 2736394..2737032 vapBC */AbrB-PIN
10 2 Sala_2662 Sala_2661 - 2807396..2807969 RelBE or parDE */RHH-RelE
11 2 Sala_2721 Sala_2722 - 2868981..2869720 vapBC */AbrB-PIN
12 2 Sala_3183 Sala_3184 - 3340488..3341030 mazEF, ccd or relBE */RHH-MazF

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Sala_2661-67.71Sala_2662Plasmid_stabil/ParE75.34NC_008048
2Sala_0580HTH_491.68Sala_0579Plasmid_stabil/ParE91.76NC_008048
3Sala_0696-60.32Sala_0697VapC/PIN73.38NC_008048
4Sala_0271COG159884.32Sala_0272VapI88.04NC_008048
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.