TADB
Yersinia pestis Nepal516 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 4534590
Link to NCBI Taxonomy Browser by Tax_id :377628
 
# TA INFO in replicon: NC_008149
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 YPN_0316 YPN_0315 - 384573..387131 -/Xre-Fic
2 2 YPN_0601 YPN_0602 - 712068..712771 relBE */Xre-RelE
3 2 YPN_0725 YPN_0724 - 850352..851134 hicBA */HicB-HicA
4 2 YPN_1806 YPN_1805 - 2041913..2042879 -/COG5642-COG5654
5 2 YPN_2244 YPN_2243 - 2528760..2529303 -/RHH-COG2929
6 2 YPN_2306 YPN_2307 - 2586382..2587214 hicBA */HicB-HicA
7 2 YPN_2910 YPN_2909 - 3268483..3269120 relBE */Xre-RelE
8 2 YPN_3081 YPN_3080 - 3465544..3466238 ygiT-mqsR (relBE) */Xre-YgiU
9 2 YPN_3083 YPN_3082 - 3466402..3467114 relBE */Xre-RelE

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1YPN_0724COG159860.13YPN_0725COG172481.74NC_008149
2YPN_2291-65.68YPN_2290Doc/DOC72.77NC_008149
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.