TADB
Escherichia coli 536, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 4938920
Link to NCBI Taxonomy Browser by Tax_id :362663
 
# TA INFO in replicon: NC_008253
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 ECP_0050 ECP_0049 - 51933..52483 mazEF, ccd or relBE */RHH-MazF
2 2 ECP_0546 ECP_0547 - 576659..577338 relBE */Xre-RelE
3 2 ECP_1193 ECP_1194 - 1232889..1234321 -/Xre-GNAT
4 2 ECP_1479 ECP_1478 - 1521805..1522361 relBE */Xre-RelE
5 2 ECP_1501 ECP_1502 - 1551349..1552505 hipBA */Xre-HipA
6 2 ECP_2060 ECP_2061 - 2127477..2127979 relBE or parDE */PHD-RelE
7 2 ECP_2763 ECP_2764 - 2904165..2904748 mazEF */AbrB-MazF
8 2 ECP_3174 ECP_3173 - 3345082..3345665 relBE */Xre-RelE
9 2 ECP_3220 ECP_3219 - 3390532..3391331 relBE */AbrB-RelE
10 2 ECP_3452 ECP_3453 - 3602520..3603279 -/YhfG-Fic
11 2 ECP_4099 ECP_4100 - 4282094..4282546 relBE */Xre-RelE
12 2 ECP_4451 ECP_4450 - 4656488..4657569 hipBA */Xre-HipA
13 2 ECP_4775 ECP_4774 - 4924188..4925844 relBE */Xre-RelE

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1ECP_0262-64.1ECP_0261StbD78.59NC_008253
2ECP_4775-63.55ECP_4776HTH_XRE/HTH_3/HTH_XRE/HipB72.57NC_008253
3ECP_1478VapI/HTH_XRE/HTH_XRE/HTH_393.35ECP_1479Plasmid_killer/HigB93.36NC_008253
4ECP_2679-61.16ECP_2678COG5499/HTH_XRE/HTH_3/HTH_XRE/VapI74.07NC_008253
5ECP_0547VapI/HTH_XRE/HTH_3/HTH_XRE/COG549989.54ECP_0546HigB/Plasmid_killer92.02NC_008253
6ECP_2420HTH_XRE/HTH_XRE/HTH_382.13ECP_2421HTH_XRE/HTH_XRE/HTH_3/HipB82.89NC_008253
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.