TADB
Rhodopseudomonas palustris BisA53 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5505494
Link to NCBI Taxonomy Browser by Tax_id :316055
 
# TA INFO in replicon: NC_008435
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 RPE_0030 RPE_0031 - 34487..35591 -/COG5642-COG5654
2 2 RPE_0401 RPE_0400 - 442950..443652 -/HEPN-MNT
3 2 RPE_1145 RPE_1144 - 1303525..1304310 -/RHH-GNAT
4 2 RPE_1392 RPE_1393 - 1567266..1567901 RelBE or parDE */RHH-RelE
5 2 RPE_1402 RPE_1403 - 1576602..1577407 -/RHH-GNAT
6 2 RPE_1412 RPE_1413 - 1584953..1585816 -/COG5642-COG5654
7 2 RPE_1488 RPE_1489 - 1673612..1674402 -/RHH-GNAT
8 2 RPE_1638 RPE_1639 - 1830091..1830923 -/RHH-GNAT
9 2 RPE_1776 RPE_1775 - 1974001..1974535 -/RHH-COG2929
10 2 RPE_1849 RPE_1848 - 2061505..2062168 -/HEPN-MNT
11 2 RPE_1994 RPE_1995 - 2209796..2210466 vapBC */AbrB-PIN
12 2 RPE_2040 RPE_2041 - 2254443..2254974 vapBC */AbrB-PIN
13 2 RPE_2043 RPE_2042 - 2255046..2255589 -/RHH-COG2929
14 2 RPE_2136 RPE_2135 - 2355148..2355644 hicBA */HicB-HicA
15 2 RPE_2192 RPE_2191 - 2429068..2429750 mazEF */AbrB-MazF
16 2 RPE_2384 RPE_2383 - 2625164..2625816 vapBC */RHH-PIN
17 2 RPE_2472 RPE_2471 - 2717569..2718446 -/Xre-COG2856
18 2 RPE_2552 RPE_2551 - 2818368..2818969 vapBC */RHH-PIN
19 2 RPE_2599 RPE_2598 - 2870491..2870929 -/RHH-COG2929
20 2 RPE_2803 RPE_2804 - 3154772..3155341 RelBE or parDE */RHH-RelE
21 2 RPE_3234 RPE_3233 - 3603061..3603712 vapBC */AbrB-PIN
22 2 RPE_3359 RPE_3360 - 3756106..3756628 -/RHH-COG2929
23 2 RPE_3410 RPE_3411 - 3809762..3810816 -/Xre-Fic
24 2 RPE_3434 RPE_3433 - 3829228..3829916 vapBC */PHD-PIN
25 2 RPE_3948 RPE_3949 - 4418873..4419580 -/PHD-MazFn
26 2 RPE_4065 RPE_4064 - 4553924..4554582 vapBC */RHH-PIN
27 2 RPE_4100 RPE_4101 - 4592856..4593516 phd-doc */AbrB-Fic
28 2 RPE_4137 RPE_4136 - 4625479..4626203 vapBC */PHD-PIN
29 2 RPE_4142 RPE_4143 - 4630756..4631473 ygiT-mqsR (relBE) */Xre-YgiU
30 2 RPE_4476 RPE_4477 - 5012841..5014324 hipBA */Xre-HipA
31 2 RPE_4723 RPE_4724 - 5303794..5304371 mazEF */XF1863-MazF
32 2 RPE_4765 RPE_4766 - 5343626..5344519 RelBE or parDE */RHH-RelE
33 2 RPE_4859 RPE_4860 - 5441096..5442027 vapBC */RHH-PIN

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1RPE_4101MazE/SpoVT_AbrB/AbrB86.26RPE_4100Doc/DOC89.21NC_008435
2RPE_2191MazE/SpoVT_AbrB87.95RPE_2192MazF/PemK88.85NC_008435
3RPE_2135COG159880.16RPE_2134COG159882.42NC_008435
4RPE_2135COG159880.16RPE_2136COG172481.52NC_008435
5RPE_4435-60.58RPE_4434VapI/HTH_XRE/HTH_XRE/HTH_3/COG549980.22NC_008435
6RPE_2804-62.9RPE_2803Plasmid_stabil/ParE78.08NC_008435
7RPE_1569-67.97RPE_1570Plasmid_stabil/ParE76.8NC_008435
8RPE_4724-67.97RPE_4723MazF/PemK75.17NC_008435
9RPE_3245-60.16RPE_3246VapC/PIN73.75NC_008435
10RPE_4194-66.68RPE_4195HTH_XRE/HTH_XRE/HTH_372.65NC_008435
11RPE_4861-68.29RPE_4862CcdA71.07NC_008435
12RPE_3659-60.03RPE_3660VapI71.05NC_008435
13RPE_3233AbrB85.48RPE_3232-66.32NC_008435
14RPE_1393RelB88.22RPE_1394HTH_XRE/HTH_XRE/HTH_3/HipB/VapI64.75NC_008435
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.