TADB
Candidatus Solibacter usitatus Ellin6076 chromosome, complete chromosome

# GENOME INFO
Genome size (bp) : 9965640
Link to NCBI Taxonomy Browser by Tax_id :234267
 
# TA INFO in replicon: NC_008536
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Acid_0189 Acid_0190 - 242139..243344 -/Xre-COG5654
2 2 Acid_0374 Acid_0373 - 474098..474777 vapBC */RHH-PIN
3 2 Acid_0688 Acid_0689 - 862415..863059 relBE */Xre-RelE
4 2 Acid_0832 Acid_0833 - 1031963..1032735 -/RHH-GNAT
5 2 Acid_0896 Acid_0897 - 1127321..1128039 vapBC */PHD-PIN
6 2 Acid_0940 Acid_0941 - 1179798..1180393 higBA (relBE) */COG5606-RelE
7 2 Acid_1001 Acid_1000 - 1241376..1241941 -/COG2442-PIN
8 2 Acid_1299 Acid_1300 - 1600719..1601512 -/RHH-GNAT
9 2 Acid_1573 Acid_1574 - 1928173..1928954 -/ArsR-COG3832
10 2 Acid_1772 Acid_1771 - 2200839..2201482 vapBC */PHD-PIN
11 2 Acid_1876 Acid_1877 - 2334915..2335668 -/ArsR-COG3832
12 2 Acid_1897 Acid_1896 - 2355325..2356141 -/ArsR-COG3832
13 2 Acid_1918 Acid_1917 - 2381610..2382425 -/ArsR-COG3832
14 2 Acid_1919 Acid_1920 - 2382547..2383214 vapBC */RHH-PIN
15 2 Acid_1963 Acid_1962 - 2460779..2461215 hicBA */HicB-HicA
16 2 Acid_2061 Acid_2062 - 2618190..2619684 hipBA */Xre-HipA
17 2 Acid_2291 Acid_2292 - 2927421..2928310 -/ArsR-COG3832
18 2 Acid_2331 Acid_2330 - 2974549..2975181 relBE */Xre-RelE
19 2 Acid_2407 Acid_2406 - 3068197..3068871 vapBC */PHD-PIN
20 2 Acid_2532 Acid_2533 - 3211809..3212404 mazEF */AbrB-MazF
21 2 Acid_2753 Acid_2752 - 3489051..3489652 vapBC */PHD-PIN
22 2 Acid_3037 Acid_3036 - 3835471..3836360 -/ArsR-COG3832
23 2 Acid_3197 Acid_3196 - 4044714..4045120 hicBA */HicB-HicA
24 2 Acid_3367 Acid_3366 - 4264013..4264807 -/ArsR-COG3832
25 2 Acid_3909 Acid_3908 - 4942125..4942761 relBE or parDE */PHD-RelE
26 2 Acid_4020 Acid_4019 - 5097390..5098242 -/ArsR-COG3832
27 2 Acid_4183 Acid_4182 - 5304610..5305277 higBA (relBE) */COG5606-RelE
28 2 Acid_4285 Acid_4284 - 5426529..5427236 -/HEPN-MNT
29 2 Acid_4331 Acid_4330 - 5489250..5489938 relBE */Xre-RelE
30 2 Acid_4367 Acid_4366 - 5531240..5531760 relBE */AbrB-RelE
31 2 Acid_5224 Acid_5223 - 6555874..6556725 -/ArsR-COG3832
32 2 Acid_5482 Acid_5481 - 6873385..6873929 -/RHH-COG2929
33 2 Acid_5515 Acid_5514 - 6914664..6915349 vapBC */RHH-PIN
34 2 Acid_5574 Acid_5575 - 6986693..6987294 vapBC */RHH-PIN
35 2 Acid_5649 Acid_5648 - 7081459..7082147 vapBC */RHH-PIN
36 2 Acid_5680 Acid_5681 - 7118202..7118828 -/COG2442-PIN
37 2 Acid_5842 Acid_5843 - 7318823..7319469 phd-doc */AbrB-Fic
38 2 Acid_6199 Acid_6200 - 7778333..7778958 -/COG2442-PIN
39 2 Acid_6371 Acid_6370 - 7989531..7989976 vapBC */RHH-PIN
40 2 Acid_6543 Acid_6542 - 8204220..8204796 -/RHH-COG2929
41 2 Acid_6545 Acid_6544 - 8204934..8205388 hicBA */HicB-HicA
42 2 Acid_6676 Acid_6677 - 8380161..8380664 -/COG2442-PIN
43 2 Acid_7038 Acid_7039 - 8852249..8852921 vapBC */RHH-PIN
44 2 Acid_7063 Acid_7062 - 8879937..8880361 hicBA */HicB-HicA
45 2 Acid_7079 Acid_7080 - 8895783..8896424 vapBC */RHH-PIN
46 2 Acid_7149 Acid_7148 - 8969925..8970518 -/COG2442-PIN
47 2 Acid_7697 Acid_7698 - 9671966..9672588 -/COG2442-PIN
48 2 Acid_7792 Acid_7793 - 9773984..9774429 hicBA */HicB-HicA

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Acid_2330VapI/HTH_XRE/HTH_XRE/HTH_389.68Acid_2331HigB/Plasmid_killer93.79NC_008536
2Acid_0689VapI/HTH_XRE/HTH_XRE/HTH_3/HipB87.89Acid_0688HigB/Plasmid_killer93.04NC_008536
3Acid_4366AbrB/SpoVT_AbrB88.33Acid_4367HigB89.55NC_008536
4Acid_1962COG159882.64Acid_1963COG172486.68NC_008536
5Acid_7062COG159882.42Acid_7063COG172482.81NC_008536
6Acid_5853COG159860.23Acid_5854COG172481.16NC_008536
7Acid_5575-66.22Acid_5574VapC/PIN73.38NC_008536
8Acid_2718-60.1Acid_2717HTH_XRE/HTH_XRE/HTH_3/VapI/HipB72.86NC_008536
9Acid_4182-61.55Acid_4183RelE72.83NC_008536
10Acid_5648-67.68Acid_5649COG1848/PIN/VapC71.85NC_008536
11Acid_1000-65.77Acid_1001COG549971.66NC_008536
12Acid_0373-67.71Acid_0374COG4113/PIN71.71NC_008536
13Acid_7148-65.26Acid_7149PIN70.85NC_008536
14Acid_6712-60.32Acid_6713COG360970.62NC_008536
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.