TADB
Escherichia coli APEC O1 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5082025
Link to NCBI Taxonomy Browser by Tax_id :405955
 
# TA INFO in replicon: NC_008563
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 APECO1_1530 APECO1_1529 - 525161..525840 relBE */Xre-RelE
2 2 APECO1_613 APECO1_612 - 1607910..1608472 relBE */Xre-RelE
3 2 APECO1_637 APECO1_638 - 1643907..1645495 hipBA */Xre-HipA
4 2 APECO1_1114 APECO1_1115 - 2178022..2178551 relBE or parDE */PHD-RelE
5 2 APECO1_2577 APECO1_2576 - 4391090..4391692 relBE */Xre-RelE
6 2 APECO1_2188 APECO1_2189 - 4834406..4836168 hipBA */Xre-HipA
7 2 APECO1_1990 APECO1_1991 - 5067253..5068930 relBE */Xre-RelE

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1APECO1_1529VapI/HTH_XRE/HTH_3/HTH_XRE/COG549989.54APECO1_1530HigB/Plasmid_killer92.02NC_008563
2APECO1_1736-64.1APECO1_1737StbD78.59NC_008563
3APECO1_4143HTH_XRE/HTH_XRE/HTH_382.13APECO1_4142HTH_XRE/HTH_XRE/HTH_3/HipB82.89NC_008563
4APECO1_1990-63.55APECO1_1989HTH_XRE/HTH_3/HTH_XRE/HipB72.57NC_008563
5APECO1_612VapI/HTH_XRE/HTH_XRE/HTH_393.25APECO1_613Plasmid_killer/HigB93.36NC_008563
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.