TADB
Gramella forsetii KT0803 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 3798465
Link to NCBI Taxonomy Browser by Tax_id :411154
 
# TA INFO in replicon: NC_008571
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 GFO_0859 GFO_0860 - 950878..951551 vapBC */RHH-PIN
2 2 GFO_0923 GFO_0922 - 999725..1000379 relBE */Xre-RelE
3 2 GFO_0939 GFO_0938 - 1011544..1012143 relBE */Xre-RelE
4 2 GFO_0946 GFO_0945 - 1016162..1016792 relBE */Xre-RelE
5 2 GFO_1992 GFO_1993 - 2107604..2108202 relBE */Xre-RelE
6 2 GFO_2358 GFO_2357 - 2506647..2507185 RelBE or parDE */RHH-RelE
7 2 GFO_2564 GFO_2563 - 2678692..2679245 mazEF, ccd or relBE */RHH-MazF
8 2 GFO_2680 GFO_2681 - 2797712..2798668 -/COG5642-COG5654
9 2 GFO_3473 GFO_3474 - 3641733..3642388 vapBC */RHH-PIN

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1GFO_2357COG360988.44GFO_2358ParE/Plasmid_stabil90.97NC_008571
2GFO_0878-64.1GFO_0879HTH_XRE/HTH_XRE/HTH_379.42NC_008571
3GFO_1483-60.58GFO_1484HTH_XRE/HTH_XRE/HTH_3/VapI72.89NC_008571
4GFO_0831-60.32GFO_0832HTH_XRE/HTH_XRE/HTH_3/HipB/VapI72.44NC_008571
5GFO_2572-61.16GFO_2573PIN/COG1848/VapC71.08NC_008571
6GFO_0903-61.74GFO_0904HTH_XRE/HTH_XRE/HTH_3/HipB75.29NC_008571
7GFO_3154-64.19GFO_3155Plasmid_stabil71.73NC_008571
8GFO_1133-66.22GFO_1134ParE/Plasmid_stabil77.68NC_008571
9GFO_0938VapI92.03GFO_0939HigB/Plasmid_killer/RelE94.38NC_008571
10GFO_1993VapI/COG549992.03GFO_1992HigB/Plasmid_killer/RelE94.38NC_008571
11GFO_0930-65.58GFO_0929ParE/Plasmid_stabil76.59NC_008571
12GFO_3474-63.1GFO_3473COG1848/VapC/PIN74.03NC_008571
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.