TADB
Mycobacterium bovis BCG str. Pasteur 1173P2 chromosome, complete chromosome

# GENOME INFO
Genome size (bp) : 4374522
Link to NCBI Taxonomy Browser by Tax_id :410289
 
# TA INFO in replicon: NC_008769
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 BCG_0096 BCG_0095A - 101285..101918 vapBC */RHH-PIN
2 2 BCG_0278 BCG_0277 - 317134..317812 vapBC */RHH-PIN
3 2 BCG_0315c BCG_0315A - 360739..361448 vapBC */RHH-PIN
4 2 BCG_0339 BCG_0338 - 394225..394751 mazEF, ccd or relBE */RHH-MazF
5 2 BCG_0341 BCG_0340 - 394799..395442 vapBC */RHH-PIN
6 2 BCG_0594c BCG_0595c - 671224..671795 vapBC */RHH-PIN
7 2 BCG_0627 BCG_0626 - 708592..709211 vapBC */RHH-PIN
8 2 BCG_0641c BCG_0642c - 725724..726370 vapBC */PHD-PIN
9 2 BCG_0644c BCG_0645c - 728039..728685 vapBC */AbrB-PIN
10 2 BCG_0655 BCG_0654 - 734129..734772 vapBC */RHH-PIN
11 2 BCG_0664 BCG_0663A - 741667..742292 vapBC */RHH-PIN
12 2 BCG_0670 BCG_0669 - 747296..747945 vapBC */RHH-PIN
13 2 BCG_0673 BCG_0672 - 748911..749575 vapBC */PHD-PIN
14 2 BCG_0705c BCG_0706c - 784393..785026 vapBC */RHH-PIN
15 2 BCG_0708c BCG_0709c - 786094..786634 mazEF, ccd or relBE */RHH-MazF
16 2 BCG_0710c BCG_0711c - 786744..787546 vapBC */RHH-PIN
17 2 BCG_0799 BCG_0798 - 872730..873439 vapBC */RHH-PIN
18 2 BCG_0971 BCG_0970 - 1054686..1055659 -/RHH-GNAT
19 2 BCG_1174 BCG_1173 - 1270831..1271399 vapBC */RHH-PIN
20 2 BCG_1302 BCG_1301 - 1414000..1414688 vapBC */RHH-PIN
21 2 BCG_1306c BCG_1307c - 1418407..1418966 relBE or parDE */PHD-RelE
22 2 BCG_1458c BCG_1459c - 1598900..1599555 vapBC */RHH-PIN
23 2 BCG_1613 BCG_1612 - 1779250..1779878 vapBC */RHH-PIN
24 2 BCG_1759c BCG_1760c - 1952246..1952859 vapBC */RHH-PIN
25 2 BCG_1780 BCG_1779 - 1972864..1973324 vapBC */RHH-PIN
26 2 BCG_1873c BCG_1874c - 2088212..2088867 vapBC */RHH-PIN
27 2 BCG_1992 BCG_1991 - 2202886..2203409 vapBC */RHH-PIN
28 2 BCG_1994 BCG_1995 - 2203744..2204747 relBE */Xre-RelE
29 2 BCG_1998c BCG_1999c - 2205841..2206385 RelBE or parDE */RHH-RelE
30 2 BCG_2001c BCG_2001A - 2207026..2207709 vapBC */PHD-PIN
31 2 BCG_2005c BCG_2006c - 2211394..2212292 -/COG5642-COG5654
32 2 BCG_2027 BCG_2026 - 2236685..2237326 vapBC */RHH-PIN
33 2 BCG_2036 BCG_2035 - 2243932..2245057 -/COG2442-PIN
34 2 BCG_2039c BCG_2038c - 2245457..2246376 relBE */Xre-RelE
35 2 BCG_2054 BCG_2053 - 2264946..2265754 -/ArsR-COG3832
36 2 BCG_2122c BCG_2123c - 2345539..2346234 vapBC */RHH-PIN
37 2 BCG_2514 BCG_2513 - 2771879..2772531 vapBC */RHH-PIN
38 2 BCG_2548 BCG_2547 - 2814887..2815512 vapBC */RHH-PIN
39 2 BCG_2551c BCG_2552c - 2818063..2818703 vapBC */RHH-PIN
40 2 BCG_2569 BCG_2568 - 2832235..2833019 vapBC */RHH-PIN
41 2 BCG_2571 BCG_2570 - 2833058..2833689 vapBC */RHH-PIN
42 2 BCG_2572c BCG_2573c - 2834179..2834816 vapBC */RHH-PIN
43 2 BCG_2619 BCG_2618 - 2889948..2890594 vapBC */AbrB-PIN
44 2 BCG_2627 BCG_2626 - 2894516..2895230 vapBC */RHH-PIN
45 2 BCG_2773c BCG_2774c - 3023619..3024298 vapBC */RHH-PIN
46 2 BCG_2775c BCG_2776c - 3024324..3024985 vapBC */RHH-PIN
47 2 BCG_2849c BCG_2850c - 3090606..3091210 vapBC */PHD-PIN
48 2 BCG_2888 BCG_2887 - 3131469..3132017 relBE or parDE */PHD-RelE
49 2 BCG_2894 BCG_2893 - 3137070..3137757 vapBC */RHH-PIN
50 2 BCG_3206c BCG_3207c - 3504445..3505334 vapBC */PHD-PIN
51 2 BCG_3208 BCG_3209 - 3505565..3506235 relBE */Xre-RelE
52 2 BCG_3211 BCG_3210 - 3506773..3507737 -/Xre-COG5654
53 2 BCG_3386c BCG_3387c - 3696213..3696887 vapBC */RHH-PIN
54 2 BCG_3430 BCG_3429 - 3758328..3758857 relBE or parDE */PHD-RelE
55 2 BCG_3453c BCG_3454c - 3785450..3786150 vapBC */PHD-PIN
56 2 BCG_3478 BCG_3477 - 3812754..3813460 vapBC */PHD-PIN
57 2 BCG_3756c BCG_3756A - 4112921..4113579 vapBC */RHH-PIN
58 2 BCG_3808c BCG_3809c - 4170031..4171000 -/MerR-PIN

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1BCG_1459cHTH_487.15BCG_1458cVapC/PIN/COG184887.26NC_008769
2BCG_2570HTH_486.05BCG_2569VapC/PIN86.5NC_008769
3BCG_1301-64.13BCG_1302COG1848/PIN70.73NC_008769
4BCG_1999cCOG360988.69BCG_1998cPlasmid_stabil/ParE92.63NC_008769
5BCG_2026-60.97BCG_2027PIN/VapC/COG184874.85NC_008769
6BCG_1173-67.1BCG_1174VapC/PIN/COG184873.44NC_008769
7BCG_1013A-67.1BCG_1014COG4113/PIN73.33NC_008769
8BCG_0715-67.1BCG_0714VapC/PIN73.03NC_008769
9BCG_2037c-62.64BCG_2038cHTH_XRE/HTH_XRE/HTH_3/HipB72.56NC_008769
10BCG_0277-67.16BCG_0278COG1848/PIN71.27NC_008769
11BCG_2774c-63.06BCG_2773cVapC/PIN/COG184873.22NC_008769
12BCG_0663A-64.87BCG_0664COG1848/PIN/VapC73.98NC_008769
13BCG_0709c-65BCG_0708cPemK/MazF73.6NC_008769
14BCG_2536cHTH_3/HTH_XRE/HTH_XRE/HipB63.05BCG_2535cVapC/PIN83.69NC_008769
15BCG_2570HTH_486.05BCG_2571VapC/PIN/COG184886.81NC_008769
16BCG_0340HTH_483.65BCG_0341VapC/PIN/COG184885.16NC_008769
17BCG_2893HTH_463.14BCG_2894COG1848/PIN84.12NC_008769
18BCG_1557-61BCG_1558PemK/MazF76.27NC_008769
19BCG_1982c-60.58BCG_1981cPemK/MazF75.18NC_008769
20BCG_2547-64.87BCG_2548VapC/PIN74.75NC_008769
21BCG_1760c-62.68BCG_1759cCOG4113/PIN74.13NC_008769
22BCG_1874c-67.68BCG_1873cCOG1848/PIN73.62NC_008769
23BCG_1612-63.81BCG_1613PIN/VapC/COG184873.74NC_008769
24BCG_2123c-67.97BCG_2122cCOG1848/PIN/VapC71.52NC_008769
25BCG_0095A-68.29BCG_0096COG4113/PIN71.24NC_008769
26BCG_2513-64.19BCG_2514COG184870.6NC_008769
27BCG_0315AHTH_485.86BCG_0317cCOG442361.41NC_008769
28BCG_1163cCOG3609/HTH_483.47BCG_1162cPemK/MazF88.23NC_008769
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.