TADB
Verminephrobacter eiseniae EF01-2 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5566749
Link to NCBI Taxonomy Browser by Tax_id :391735
 
# TA INFO in replicon: NC_008786
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Veis_0004 Veis_0005 - 7315..8411 -/Xre-Fic
2 2 Veis_0177 Veis_0176 - 196902..197632 vapBC */RHH-PIN
3 2 Veis_0467 Veis_0468 - 535616..536356 relBE */Xre-RelE
4 2 Veis_1127 Veis_1128 - 1247060..1247724 vapBC */AbrB-PIN
5 2 Veis_1416 Veis_1415 - 1572599..1573494 relBE */AbrB-RelE
6 2 Veis_1509 Veis_1510 - 1691528..1692228 vapBC */AbrB-PIN
7 2 Veis_1559 Veis_1558 - 1745641..1746152 higBA (relBE) */COG5606-RelE
8 2 Veis_1887 Veis_1886 - 2110287..2110785 -/RHH-COG2929
9 2 Veis_2039 Veis_2040 - 2316996..2317669 vapBC */PHD-PIN
10 2 Veis_2290 Veis_2291 - 2599411..2600107 RelBE or parDE */RHH-RelE
11 2 Veis_2466 Veis_2467 - 2801317..2801939 phd-doc */AbrB-Fic
12 2 Veis_2486 Veis_2485 - 2818551..2819152 -/COG2442-PIN
13 2 Veis_2844 Veis_2845 - 3195429..3196993 -/-
14 2 Veis_2859 Veis_2858 - 3203935..3204400 higBA (relBE) */COG5606-RelE
15 2 Veis_2862 Veis_2863 - 3210446..3211009 RelBE or parDE */RHH-RelE
16 2 Veis_2866 Veis_2865 - 3211383..3212008 mazEF */AbrB-MazF
17 2 Veis_2869 Veis_2868 - 3212496..3213111 -/RHH-COG2929
18 2 Veis_2884 Veis_2885 - 3228780..3229338 -/RHH-COG2929
19 2 Veis_3010 Veis_3009 - 3357192..3359251 -/HEPN-MNT
20 2 Veis_3103 Veis_3102 - 3451377..3452986 hipBA */Xre-HipA
21 2 Veis_3345 Veis_3344 - 3725143..3725761 RelBE or parDE */RHH-RelE
22 2 Veis_3349 Veis_3350 - 3727044..3727690 relBE */Xre-RelE
23 2 Veis_3353 Veis_3351 - 3727887..3729069 relBE */Xre-RelE
24 2 Veis_3470 Veis_3471 - 3841239..3841879 relBE */Xre-RelE
25 2 Veis_3474 Veis_3473 - 3842292..3842890 vapBC */RHH-PIN
26 2 Veis_3672 Veis_3671 - 4059399..4060011 relBE */Xre-RelE
27 2 Veis_3767 Veis_3768 - 4160108..4160781 vapBC */RHH-PIN
28 2 Veis_3960 Veis_3961 - 4347597..4348259 vapBC */AbrB-PIN
29 2 Veis_4126 Veis_4125 - 4524120..4524765 relBE */Xre-RelE
30 2 Veis_4132 Veis_4131 - 4530134..4530712 relBE */Xre-RelE
31 2 Veis_4147 Veis_4146 - 4562628..4563364 vapBC */AbrB-PIN
32 2 Veis_4163 Veis_4162 - 4579026..4580065 -/MerR-PIN
33 2 Veis_4341 Veis_4340 - 4782621..4783108 RelBE or parDE */RHH-RelE
34 2 Veis_4347 Veis_4348 - 4790112..4790730 higBA (relBE) */COG5606-RelE
35 2 Veis_4660 Veis_4661 - 5152288..5153546 -/Xre-COG2856
36 2 Veis_4707 Veis_4706 - 5195978..5196669 relBE */Xre-RelE
37 2 Veis_4712 Veis_4711 - 5199894..5200780 vapBC */PHD-PIN
38 2 Veis_4898 Veis_4899 - 5415376..5415977 -/COG2442-PIN
39 2 Veis_4942 Veis_4943 - 5463025..5464652 hipBA */Xre-HipA
40 2 Veis_4998 Veis_4999 - 5546260..5546792 RelBE or parDE */RHH-RelE

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Veis_3474VapC/PIN/COG184887.05Veis_3475StbC93.01NC_008786
2Veis_4131VapI/HTH_XRE/HTH_XRE/HTH_389.93Veis_4132HigB/Plasmid_killer92.54NC_008786
3Veis_2467SpoVT_AbrB/MazE/AbrB88.11Veis_2466DOC/Doc89.93NC_008786
4Veis_2040StbD86.34Veis_2039VapC/PIN/COG184887.1NC_008786
5Veis_4340-65.58Veis_4341ParE/Plasmid_stabil77.5NC_008786
6Veis_2857-60.16Veis_2858HTH_XRE/HTH_XRE/HTH_373.22NC_008786
7Veis_3352-60.87Veis_3353Plasmid_stabil77.98NC_008786
8Veis_4124-61.64Veis_4125HTH_XRE/HTH_XRE/HTH_3/HipB72.48NC_008786
9Veis_4125HTH_XRE/HTH_XRE/HTH_3/HipB72.48Veis_4126-62.68NC_008786
10Veis_3353Plasmid_stabil77.98Veis_3354-68.39NC_008786
11Veis_2040StbD86.34Veis_2041HTH_XRE/HTH_XRE/HTH_361.96NC_008786
12Veis_4273-67.68Veis_4274PIN/COG1848/VapC70.56NC_008786
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.