TADB
Methanoculleus marisnigri JR1 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 2478101
Link to NCBI Taxonomy Browser by Tax_id :368407
 
# TA INFO in replicon: NC_009051
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Memar_0170 Memar_0171 - 155516..156210 -/HEPN-MNT
2 2 Memar_0176 Memar_0177 - 160564..161097 RelBE or parDE */RHH-RelE
3 2 Memar_0180 Memar_0179 - 162031..162500 RelBE or parDE */RHH-RelE
4 2 Memar_0209 Memar_0210 - 192374..193239 -/HEPN-MNT
5 2 Memar_0545 Memar_0544 - 525938..526758 -/HEPN-MNT
6 2 Memar_0546 Memar_0547 - 526955..527432 hicBA */HicB-HicA
7 2 Memar_0664 Memar_0663 - 634180..634679 RelBE or parDE */RHH-RelE
8 2 Memar_1098 Memar_1097 - 1091159..1091634 hicBA */HicB-HicA
9 2 Memar_1101 Memar_1100 - 1092011..1092476 RelBE or parDE */RHH-RelE
10 2 Memar_1113 Memar_1112 - 1096291..1096942 -/HEPN-MNT
11 2 Memar_1114 Memar_1115 - 1097425..1098020 vapBC */Xre-PIN
12 2 Memar_1162 Memar_1163 - 1148365..1148829 -/HEPN-MNT
13 2 Memar_1164 Memar_1165 - 1148875..1149506 -/HEPN-MNT
14 2 Memar_1228 Memar_1229 - 1207393..1208036 -/HEPN-MNT
15 2 Memar_1246 Memar_1245 - 1220303..1220730 hicBA */HicB-HicA
16 2 Memar_1472 Memar_1473 - 1462091..1462584 RelBE or parDE */RHH-RelE
17 2 Memar_1588 Memar_1589 - 1593447..1594321 -/HEPN-MNT
18 2 Memar_1702 Memar_1701 - 1699566..1700097 vapBC */RHH-PIN
19 2 Memar_2115 Memar_2114 - 2104903..2105976 -/HEPN-MNT
20 2 Memar_2366 Memar_2367 - 2353173..2353846 -/HEPN-MNT

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Memar_1115-63.81Memar_1114VapC/PIN/COG184888.12NC_009051
2Memar_0547COG159882.64Memar_0546COG172486.22NC_009051
3Memar_0663-65.58Memar_0664RelE/Plasmid_killer/HigB81.07NC_009051
4Memar_0177-62.42Memar_0176RelE79.67NC_009051
5Memar_1473-63.55Memar_1472RelE79.51NC_009051
6Memar_1100-67.68Memar_1101RelE79.93NC_009051
7Memar_0213-61.71Memar_0212RelE79.26NC_009051
8Memar_0179-60.61Memar_0180RelE78.83NC_009051
9Memar_1818-60.06Memar_1819HTH_XRE/HTH_XRE/HTH_3/HipB/VapI76.6NC_009051
10Memar_1701-62.55Memar_1702VapC/PIN/COG184876.1NC_009051
11Memar_2450-67.68Memar_2449HTH_XRE/HTH_XRE/HTH_3/HipB/VapI74.21NC_009051
12Memar_1853-63.84Memar_1854COG1848/PIN/VapC72.1NC_009051
13Memar_0180RelE78.83Memar_0181-68.39NC_009051
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.