TADB
Pseudomonas mendocina ymp chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5072807
Link to NCBI Taxonomy Browser by Tax_id :399739
 
# TA INFO in replicon: NC_009439
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Pmen_0565 Pmen_0566 - 615763..617495 pmenTA/-
2 2 Pmen_1045 Pmen_1046 - 1180935..1181596 vapBC */RHH-PIN
3 2 Pmen_2126 Pmen_2127 - 2349802..2350364 RelBE or parDE */RHH-RelE
4 2 Pmen_3328 Pmen_3327 - 3672071..3673482 -/Xre-GNAT
5 2 Pmen_3334 Pmen_3335 - 3681520..3682875 -/Xre-COG5654
6 2 Pmen_3762 Pmen_3761 - 4145833..4146401 RelBE or parDE */RHH-RelE
7 2 Pmen_4032 Pmen_4031 - 4411533..4413130 hipBA */Xre-HipA

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Pmen_3761-67.9Pmen_3762Plasmid_stabil/ParE78.86NC_009439
2Pmen_1318-64.03Pmen_1317HTH_XRE/HTH_XRE/HTH_3/HipB71.98NC_009439
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.