TADB
Vibrio cholerae O395 chromosome 1, complete sequence. chromosome

# GENOME INFO
Genome size (bp) : 1108250
Link to NCBI Taxonomy Browser by Tax_id :345073
 
# TA INFO in replicon: NC_009456
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 VC0395_0757 VC0395_0756 - 809326..809841 RelBE or parDE */RHH-RelE
2 2 VC0395_0759 VC0395_0760 - 810288..811243 -/RHH-GNAT
3 2 VC0395_0765 VC0395_0764 - 813160..813926 -/RHH-GNAT
4 2 VC0395_0794 VC0395_0795 - 834163..834712 relBE or parDE */PHD-RelE
5 2 VC0395_0804 VC0395_0803 - 839109..839742 relBE */Xre-RelE
6 2 VC0395_0823 VC0395_0822 - 852832..853360 relBE or parDE */PHD-RelE
7 2 VC0395_0849 VC0395_0850 - 867969..868516 relBE or parDE */PHD-RelE
8 2 VC0395_0861 VC0395_0862 - 873866..874443 relBE or parDE */PHD-RelE
9 2 VC0395_0916 VC0395_0915 - 901935..902701 -/RHH-GNAT
10 2 VC0395_0930 VC0395_0929 - 909950..910631 relBE */Xre-RelE
11 2 VC0395_0937 VC0395_0936 - 914062..914640 relBE or parDE */PHD-RelE

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1VC0395_0822StbD92.1VC0395_0823RelE93.57NC_009456
2VC0395_0929VapI/HTH_XRE/HTH_3/HTH_XRE/HipB90.38VC0395_0930HigB/Plasmid_killer93.48NC_009456
3VC0395_0862StbD90.84VC0395_0861Plasmid_stabil/ParE92.81NC_009456
4VC0395_0757Plasmid_stabil/ParE90.96VC0395_0758StbD91NC_009456
5VC0395_0899-60.94VC0395_0900Plasmid_stabil/ParE92.18NC_009456
6VC0395_0803HTH_XRE/HTH_XRE/HTH_385.39VC0395_0804RelE86.72NC_009456
7VC0395_0930HigB/Plasmid_killer93.48VC0395_0931-60.74NC_009456
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.