TADB
Geobacter uraniireducens Rf4 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5136364
Link to NCBI Taxonomy Browser by Tax_id :351605
 
# TA INFO in replicon: NC_009483
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Gura_0038 Gura_0037 - 45042..45736 vapBC/PHD-PIN
2 2 Gura_0169 Gura_0170 - 232962..233670 vapBC */AbrB-PIN
3 2 Gura_0236 Gura_0237 - 301511..302210 -/HEPN-MNT
4 2 Gura_0258 Gura_0259 - 319942..320763 hipBA */Xre-HipA
5 2 Gura_0308 Gura_0309 - 371853..372499 vapBC */AbrB-PIN
6 2 Gura_0312 Gura_0311 - 373154..373659 relBE or parDE */PHD-RelE
7 2 Gura_0352 Gura_0353 - 415197..415726 RelBE or parDE */RHH-RelE
8 2 Gura_0409 Gura_0410 - 484657..485188 -/HEPN-MNT
9 2 Gura_0413 Gura_0412 - 485747..486342 relBE */Xre-RelE
10 2 Gura_0555 Gura_0554 - 654954..655402 hicBA */HicB-HicA
11 2 Gura_0562 Gura_0563 - 663976..664594 -/RHH-COG2929
12 2 Gura_0581 Gura_0580 - 698148..698622 -/RHH-COG2929
13 2 Gura_0585 Gura_0586 - 703493..704174 -/HEPN-MNT
14 2 Gura_0589 Gura_0590 - 705409..706489 -/Xre-COG5654
15 2 Gura_0601 Gura_0600 - 725017..725402 hicBA/-
16 2 Gura_0629 Gura_0630 - 751838..752550 vapBC */PHD-PIN
17 2 Gura_0658 Gura_0659 - 786693..787518 -/HEPN-MNT
18 2 Gura_0713 Gura_0714 - 846758..847461 vapBC */PHD-PIN
19 2 Gura_0788 Gura_0787 - 940066..940570 -/RHH-COG2929
20 2 Gura_0832 Gura_0833 - 990752..991410 mazEF, ccd or relBE */RHH-MazF
21 2 Gura_0843 Gura_0842 - 1002266..1002924 hicBA */HicB-HicA
22 2 Gura_0946 Gura_0947 - 1121325..1121929 vapBC */RHH-PIN
23 2 Gura_1009 Gura_1008 - 1197201..1197711 -/RHH-COG2929
24 2 Gura_1133 Gura_1134 - 1335679..1336459 -/HEPN-MNT
25 2 Gura_1139 Gura_1140 - 1339088..1339795 vapBC */PHD-PIN
26 2 Gura_1200 Gura_1199 - 1413699..1414426 -/HEPN-MNT
27 2 Gura_1215 Gura_1216 - 1431721..1432318 relBE */Xre-RelE
28 2 Gura_1248 Gura_1249 - 1480200..1480957 RelBE or parDE */RHH-RelE
29 2 Gura_1251 Gura_1252 - 1481585..1482180 mazEF, ccd or relBE */RHH-MazF
30 2 Gura_1263 Gura_1262 - 1492210..1492810 relBE or parDE */PHD-RelE
31 2 Gura_1299 Gura_1300 - 1534607..1535331 ygiT-mqsR (relBE) */Xre-YgiU
32 2 Gura_1318 Gura_1319 - 1555055..1555636 relBE or parDE */PHD-RelE
33 2 Gura_1359 Gura_1358 - 1599611..1600108 higBA (relBE) */COG5606-RelE
34 2 Gura_1396 Gura_1395 - 1637624..1638176 -/RHH-COG2929
35 2 Gura_1404 Gura_1405 - 1646187..1646764 vapBC */AbrB-PIN
36 2 Gura_1411 Gura_1410 - 1649571..1650432 ygiT-mqsR (relBE) */Xre-YgiU
37 2 Gura_1424 Gura_1423 - 1662691..1663265 relBE or parDE */PHD-RelE
38 2 Gura_1442 Gura_1441 - 1674695..1675418 ygiT-mqsR (relBE) */Xre-YgiU
39 2 Gura_1444 Gura_1443 - 1675651..1676153 relBE or parDE */PHD-RelE
40 2 Gura_1477 Gura_1476 - 1719553..1721154 hipBA */Xre-HipA
41 2 Gura_1479 Gura_1478 - 1721663..1722315 mazEF */AbrB-MazF
42 2 Gura_1487 Gura_1488 - 1734531..1735132 relBE or parDE */PHD-RelE
43 2 Gura_1725 Gura_1726 - 2003389..2004103 -/HEPN-MNT
44 2 Gura_1751 Gura_1750 - 2033145..2033811 vapBC */RHH-PIN
45 2 Gura_1861 Gura_1862 - 2159109..2159943 -/HEPN-MNT
46 2 Gura_1868 Gura_1867 - 2166833..2167461 vapBC */AbrB-PIN
47 2 Gura_1971 Gura_1970 - 2281923..2282509 mazEF, ccd or relBE */RHH-MazF
48 2 Gura_2003 Gura_2002 - 2320221..2320876 mazEF, ccd or relBE */RHH-MazF
49 2 Gura_2086 Gura_2085 - 2442891..2443656 -/HEPN-MNT
50 2 Gura_2093 Gura_2092 - 2446918..2448506 hipBA */Xre-HipA
51 2 Gura_2099 Gura_2098 - 2452726..2453231 relBE or parDE */PHD-RelE
52 2 Gura_2215 Gura_2216 - 2574893..2576292 -/Xre-COG2856
53 2 Gura_2272 Gura_2273 - 2633925..2634465 -/RHH-COG2929
54 2 Gura_2398 Gura_2397 - 2782194..2782827 vapBC */PHD-PIN
55 2 Gura_2455 Gura_2456 - 2839632..2840245 vapBC/PHD-PIN
56 2 Gura_2467 Gura_2468 - 2852242..2853347 -/COG5642-COG5654
57 2 Gura_2470 Gura_2469 - 2853699..2854386 -/HEPN-MNT
58 2 Gura_2716 Gura_2715 - 3156197..3156759 mazEF/RHH-MazF
59 2 Gura_2718 Gura_2717 - 3156865..3157378 RelBE or parDE */RHH-RelE
60 2 Gura_2727 Gura_2726 - 3162267..3162847 RelBE or parDE */RHH-RelE
61 2 Gura_3013 Gura_3012 - 3495127..3495776 vapBC */AbrB-PIN
62 2 Gura_3164 Gura_3165 - 3734873..3735519 vapBC */RHH-PIN
63 2 Gura_3173 Gura_3172 - 3741419..3742271 -/HEPN-MNT
64 2 Gura_3203 Gura_3202 - 3768814..3769477 -/HEPN-MNT
65 2 Gura_3267 Gura_3268 - 3838678..3839220 relBE or parDE */PHD-RelE
66 2 Gura_3378 Gura_3379 - 3969507..3970078 mazEF */AbrB-MazF
67 2 Gura_3420 Gura_3421 - 4020628..4021207 relBE or parDE */PHD-RelE
68 2 Gura_3493 Gura_3494 - 4112697..4113349 vapBC */AbrB-PIN
69 2 Gura_3603 Gura_3602 - 4226446..4227145 relBE */Xre-RelE
70 2 Gura_3814 Gura_3815 - 4459680..4460259 mazEF */Xre-MazF
71 2 Gura_3863 Gura_3864 - 4515374..4516031 vapBC */RHH-PIN
72 2 Gura_3865 Gura_3866 - 4516205..4516819 vapBC */PHD-PIN
73 2 Gura_3867 Gura_3868 - 4517119..4517780 vapBC */RHH-PIN
74 2 Gura_3915 Gura_3916 - 4564317..4564998 parDE/RHH-RelE
75 2 Gura_4165 Gura_4166 - 4824247..4824946 -/HEPN-MNT

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Gura_2002-62.19Gura_2003MazF/PemK74.88NC_009483
2Gura_1750-63.06Gura_1751VapC/PIN/COG184875.02NC_009483
3Gura_1443StbD91.22Gura_1444RelE/HigB/Plasmid_killer92.51NC_009483
4Gura_1249-62.55Gura_1248Plasmid_stabil/ParE75.37NC_009483
5Gura_1216VapI/HTH_XRE/HTH_XRE/HTH_391.61Gura_1215HigB/Plasmid_killer93.42NC_009483
6Gura_0600COG159882.42Gura_0601COG172488.35NC_009483
7Gura_0353-68.13Gura_0352Plasmid_stabil73.5NC_009483
8Gura_4388HTH_XRE/HTH_XRE/HTH_3/HipB63.93Gura_4387PIN82.62NC_009483
9Gura_3815-67.68Gura_3814MazF74.48NC_009483
10Gura_3206Plasmid_stabil/ParE76.38Gura_3207-64.19NC_009483
11Gura_3012AbrB/SpoVT_AbrB85.32Gura_3013PIN/COG1848/VapC87.23NC_009483
12Gura_0309-66.22Gura_0308PIN/COG184870.58NC_009483
13Gura_0596-65.26Gura_0595PIN/COG1848/VapC72.04NC_009483
14Gura_3205-60.58Gura_3206Plasmid_stabil/ParE76.38NC_009483
15Gura_1251CcdB88.68Gura_1250-62.42NC_009483
16Gura_0947-67.97Gura_0946VapC/PIN/COG184874.22NC_009483
17Gura_3864-66.32Gura_3863VapC/PIN73.15NC_009483
18Gura_1405AbrB/SpoVT_AbrB85.39Gura_1404PIN/VapC/COG1848/COG411386.3NC_009483
19Gura_3268StbD91.12Gura_3267RelE92.24NC_009483
20Gura_1262-63.03Gura_1263Plasmid_stabil/ParE77.52NC_009483
21Gura_3200-67.16Gura_3199Plasmid_stabil/ParE/RelE79.34NC_009483
22Gura_2098StbD/Phd91.27Gura_2099RelE93.71NC_009483
23Gura_0412VapI/HTH_XRE/HTH_XRE/HTH_3/HipB89.62Gura_0413HigB/Plasmid_killer91.96NC_009483
24Gura_0833HTH_486.47Gura_0832MazF/PemK87.63NC_009483
25Gura_2715-67.68Gura_2716PemK/MazF75.51NC_009483
26Gura_2726-63.58Gura_2727Plasmid_stabil/ParE74.75NC_009483
27Gura_1137-60.77Gura_1136HTH_XRE/HTH_XRE/HTH_3/HipB76.61NC_009483
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.