TADB
Sphingomonas wittichii RW1 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5382261
Link to NCBI Taxonomy Browser by Tax_id :392499
 
# TA INFO in replicon: NC_009511
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Swit_0047 Swit_0046 - 47310..47925 hicBA */HicB-HicA
2 2 Swit_0155 Swit_0156 - 150539..151238 relBE */Xre-RelE
3 2 Swit_0626 Swit_0625 - 678684..679464 -/ArsR-COG3832
4 2 Swit_1189 Swit_1190 - 1351445..1352270 -/ArsR-COG3832
5 2 Swit_1213 Swit_1214 - 1374650..1375169 -/RHH-COG2929
6 2 Swit_1319 Swit_1318 - 1475807..1476474 vapBC */PHD-PIN
7 2 Swit_1959 Swit_1958 - 2194408..2195533 -/COG5642-COG5654
8 2 Swit_2183 Swit_2184 - 2446153..2446782 relBE */Xre-RelE
9 2 Swit_2245 Swit_2244 - 2500469..2501487 -/ArsR-COG3832
10 2 Swit_2424 Swit_2425 - 2696246..2696832 relBE */Xre-RelE
11 2 Swit_2631 Swit_2632 - 2915505..2916181 vapBC */RHH-PIN
12 2 Swit_2661 Swit_2660 - 2940495..2941145 vapBC */AbrB-PIN
13 2 Swit_2739 Swit_2740 - 3026185..3026808 relBE or parDE */PHD-RelE
14 2 Swit_3386 Swit_3387 - 3714718..3715298 mazEF */XF1863-MazF
15 2 Swit_3889 Swit_3888 - 4276366..4277060 vapBC */RHH-PIN
16 2 Swit_4066 Swit_4067 - 4467351..4468742 -/Xre-COG2856
17 2 Swit_4668 Swit_4667 - 5134886..5135568 vapBC */PHD-PIN
18 2 Swit_4881 Swit_4882 - 5377857..5378406 mazEF */AbrB-MazF

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Swit_4068-64.1Swit_4067HTH_XRE/HTH_XRE/HTH_3/HipB/VapI74.59NC_009511
2Swit_2184VapI/HTH_XRE/HTH_3/HTH_XRE90.13Swit_2183Plasmid_killer/HigB93.67NC_009511
3Swit_3387-65.77Swit_3386MazF/PemK74.25NC_009511
4Swit_2425VapI/HTH_XRE/HTH_XRE/HTH_3/COG5499/HipB88.45Swit_2424Plasmid_killer/HigB92.65NC_009511
5Swit_4882AbrB/SpoVT_AbrB/MazE86.94Swit_4881MazF/PemK87.34NC_009511
6Swit_2632HicB81.1Swit_2631PIN/COG184882.91NC_009511
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.