TADB
Pseudomonas putida F1 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5959964
Link to NCBI Taxonomy Browser by Tax_id :351746
 
# TA INFO in replicon: NC_009512
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Pput_0290 Pput_0291 - 336593..337584 relBE */Xre-RelE
2 2 Pput_1208 Pput_1207 - 1367364..1367879 RelBE or parDE */RHH-RelE
3 2 Pput_1380 Pput_1381 - 1549835..1550345 -/RHH-COG2929
4 2 Pput_1648 Pput_1649 - 1853401..1854101 ygiT-mqsR (relBE) */Xre-YgiU
5 2 Pput_3261 Pput_3262 - 3669955..3670964 -/COG5642-COG5654
6 2 Pput_3670 Pput_3671 - 4108311..4109598 -/Xre-GNAT
7 2 Pput_4191 Pput_4192 - 4692635..4693221 relBE */Xre-RelE

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Pput_4192VapI/HTH_XRE/HTH_XRE/HTH_3/HipB88.06Pput_4191HigB/Plasmid_killer94NC_009512
2Pput_4002-64.19Pput_4003HTH_XRE/HTH_3/HTH_XRE/HipB73.79NC_009512
3Pput_3396-61.42Pput_3397HTH_XRE/HTH_3/HTH_XRE/HipB/VapI73.12NC_009512
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.