TADB
Roseiflexus sp. RS-1 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5801598
Link to NCBI Taxonomy Browser by Tax_id :357808
 
# TA INFO in replicon: NC_009523
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 RoseRS_0060 RoseRS_0059 - 68475..72610 -/Xre-COG2856
2 2 RoseRS_0074 RoseRS_0073 - 88533..89379 -/HEPN-MNT
3 2 RoseRS_0083 RoseRS_0084 - 98048..98693 -/HEPN-MNT
4 2 RoseRS_0086 RoseRS_0085 - 99040..99736 -/HEPN-MNT
5 2 RoseRS_0173 RoseRS_0172 - 217866..218358 -/RHH-COG2929
6 2 RoseRS_0185 RoseRS_0184 - 231731..232404 vapBC */PHD-PIN
7 2 RoseRS_0380 RoseRS_0379 - 479985..480503 relBE */Xre-RelE
8 2 RoseRS_0547 RoseRS_0548 - 684902..685538 -/HEPN-MNT
9 2 RoseRS_0654 RoseRS_0655 - 808842..809374 -/COG2442-PIN
10 2 RoseRS_0674 RoseRS_0673 - 841546..842087 -/COG2442-PIN
11 2 RoseRS_0696 RoseRS_0695 - 868104..868726 -/COG2442-PIN
12 2 RoseRS_0769 RoseRS_0770 - 950518..951368 -/HEPN-MNT
13 2 RoseRS_0900 RoseRS_0899 - 1112592..1113234 -/HEPN-MNT
14 2 RoseRS_1450 RoseRS_1451 - 1763386..1764121 -/HEPN-MNT
15 2 RoseRS_1788 RoseRS_1787 - 2208436..2208851 hicBA */HicB-HicA
16 2 RoseRS_1884 RoseRS_1883 - 2339475..2340076 vapBC */RHH-PIN
17 2 RoseRS_1995 RoseRS_1996 - 2474580..2475190 vapBC */PHD-PIN
18 2 RoseRS_2038 RoseRS_2039 - 2528964..2529537 relBE or parDE */PHD-RelE
19 2 RoseRS_2191 RoseRS_2192 - 2700664..2701402 -/HEPN-MNT
20 2 RoseRS_2328 RoseRS_2327 - 2880552..2881323 vapBC */Xre-PIN
21 2 RoseRS_2532 RoseRS_2533 - 3128112..3128773 -/HEPN-MNT
22 2 RoseRS_2533 RoseRS_2532 - 3128112..3128773 -/HEPN-MNT(antitoxin)
23 2 RoseRS_2587 RoseRS_2588 - 3212116..3213362 -/-
24 2 RoseRS_2954 RoseRS_2953 - 3695126..3695964 -/HEPN-MNT
25 2 RoseRS_3016 RoseRS_3017 - 3795557..3796377 vapBC */COG2886-PIN
26 2 RoseRS_3041 RoseRS_3040 - 3821124..3821856 -/HEPN-MNT
27 2 RoseRS_3128 RoseRS_3127 - 3926587..3927186 -/COG2442-PIN
28 2 RoseRS_3307 RoseRS_3308 - 4156524..4156916 mazEF */AbrB-MazF
29 2 RoseRS_3436 RoseRS_3437 - 4310212..4310936 -/HEPN-MNT
30 2 RoseRS_3505 RoseRS_3506 - 4395345..4396110 -/HEPN-MNT
31 2 RoseRS_3517 RoseRS_3516 - 4407642..4408532 -/HEPN-MNT
32 2 RoseRS_3557 RoseRS_3558 - 4454050..4455164 -/HEPN-MNT
33 2 RoseRS_3846 RoseRS_3847 - 4805845..4806580 -/HEPN-MNT
34 2 RoseRS_3905 RoseRS_3906 - 4886540..4887174 vapBC */AbrB-PIN
35 2 RoseRS_3917 RoseRS_3918 - 4902561..4903599 -/HEPN-MNT
36 2 RoseRS_4091 RoseRS_4090 - 5131610..5132393 -/HEPN-MNT
37 2 RoseRS_4093 RoseRS_4092 - 5133017..5133869 -/HEPN-MNT
38 2 RoseRS_4099 RoseRS_4098 - 5138891..5139677 -/HEPN-MNT
39 2 RoseRS_4418 RoseRS_4417 - 5537513..5538326 -/HEPN-MNT
40 2 RoseRS_4507 RoseRS_4506 - 5649431..5650186 -/HEPN-MNT
41 2 RoseRS_4528 RoseRS_4529 - 5678323..5679154 -/HEPN-MNT

: TA pair identified by RASTA-Bacteria .
- : unclassified

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1RoseRS_3046-60.61RoseRS_3045PIN/COG1848/COG411370.35NC_009523
2RoseRS_2934PemK/MazF74.13RoseRS_2935-62.52NC_009523
3RoseRS_1787COG159882.23RoseRS_1788COG172482.81NC_009523
4RoseRS_1423-62.42RoseRS_1424MazF/PemK79.54NC_009523
5RoseRS_2933-67.68RoseRS_2934PemK/MazF74.13NC_009523
6RoseRS_1883-62RoseRS_1884PIN/VapC74.86NC_009523
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.