TADB
Alkaliphilus metalliredigens QYMF chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 4929566
Link to NCBI Taxonomy Browser by Tax_id :293826
 
# TA INFO in replicon: NC_009633
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Amet_0378 Amet_0377 - 415537..416116 relBE or parDE */PHD-RelE
2 2 Amet_0596 Amet_0595 - 628403..628991 relBE or parDE */PHD-RelE
3 2 Amet_0740 Amet_0739 - 782991..783694 -/HEPN-MNT
4 2 Amet_0747 Amet_0746 - 786167..786752 relBE or parDE */PHD-RelE
5 2 Amet_0755 Amet_0756 - 791434..792145 -/HEPN-MNT
6 2 Amet_0837 Amet_0838 - 875815..876698 -/Xre-COG2856
7 2 Amet_2386 Amet_2387 - 2459439..2460688 -/Xre-COG2856
8 2 Amet_3356 Amet_3355 - 3407832..3408265 hicBA */HicB-HicA
9 2 Amet_3365 Amet_3364 - 3418352..3418965 phd-doc */AbrB-Fic
10 2 Amet_3369 Amet_3370 - 3422044..3422672 relBE */Xre-RelE
11 2 Amet_4143 Amet_4144 - 4245904..4246531 mazEF, ccd or relBE */RHH-MazF

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Amet_3364SpoVT_AbrB/MazE/AbrB88.91Amet_3365Doc/DOC89.33NC_009633
2Amet_4144HTH_4/COG360986.04Amet_4143PemK/MazF88.93NC_009633
3Amet_3355COG159884.19Amet_3356COG172484.87NC_009633
4Amet_2103-60.32Amet_2104HTH_XRE77.99NC_009633
5Amet_3132-61.1Amet_3133HTH_XRE/HTH_XRE/HTH_3/HipB/VapI77.74NC_009633
6Amet_2393-60.29Amet_2392HTH_XRE/HipB/HTH_XRE/HTH_376.47NC_009633
7Amet_0746-63.06Amet_0747ParE/Plasmid_stabil76.06NC_009633
8Amet_0377-67.71Amet_0378ParE/Plasmid_stabil75.81NC_009633
9Amet_2388-67.16Amet_2389HTH_XRE/HTH_XRE/HTH_375.05NC_009633
10Amet_0386-60.03Amet_0387HTH_XRE/HTH_XRE/HTH_374.96NC_009633
11Amet_1924-60.03Amet_1925HTH_XRE/HTH_XRE/HTH_374.96NC_009633
12Amet_2611-64.19Amet_2612HTH_XRE/HTH_XRE/HTH_375.11NC_009633
13Amet_4396-60.03Amet_4395HTH_XRE/HTH_XRE/HTH_374.96NC_009633
14Amet_0176-60.77Amet_0175HTH_3/HTH_XRE/HTH_XRE74.77NC_009633
15Amet_1796-64.13Amet_1797HTH_XRE74.32NC_009633
16Amet_0595-65.68Amet_0596Plasmid_stabil73.45NC_009633
17Amet_0840-66.68Amet_0839VapI/HTH_XRE/HTH_XRE/HTH_373.15NC_009633
18Amet_2614-62.42Amet_2613HTH_XRE/HTH_XRE/HTH_3/HipB73.77NC_009633
19Amet_1464-64.19Amet_1463HTH_3/HTH_XRE/HTH_XRE72.55NC_009633
20Amet_3133HTH_XRE/HTH_XRE/HTH_3/HipB/VapI77.74Amet_3134-60.68NC_009633
21Amet_2648-61Amet_2647HTH_XRE/HTH_XRE/HTH_3/HipB71.7NC_009633
22Amet_2389HTH_XRE/HTH_XRE/HTH_375.05Amet_2390-60.19NC_009633
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.