TADB
Shewanella baltica OS185 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5229686
Link to NCBI Taxonomy Browser by Tax_id :402882
 
# TA INFO in replicon: NC_009665
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Shew185_0366 Shew185_0365 - 411584..412044 hipBA */Xre-HipA
2 2 Shew185_0650 Shew185_0649 - 790845..792386 hipBA */Xre-HipA
3 2 Shew185_0724 Shew185_0723 - 867500..868296 -/RHH-GNAT
4 2 Shew185_0762 Shew185_0763 - 894535..895210 relBE */Xre-RelE
5 2 Shew185_1871 Shew185_1872 - 2232566..2234172 hipBA */Xre-HipA
6 2 Shew185_1983 Shew185_1982 - 2362309..2363893 hipBA */Xre-HipA
7 2 Shew185_1991 Shew185_1990 - 2370533..2372249 -/-
8 2 Shew185_3248 Shew185_3247 - 3884322..3885928 hipBA */Xre-HipA
9 2 Shew185_3351 Shew185_3350 - 3994310..3995916 hipBA */Xre-HipA

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Shew185_1392-60.58Shew185_1391HTH_3/VapI/HTH_XRE/HTH_XRE/HipB72.34NC_009665
2Shew185_3252-64.19Shew185_3253HTH_XRE/HTH_3/HTH_XRE/HipB74.17NC_009665
3Shew185_0747-61.52Shew185_0746HTH_XRE/HTH_3/HTH_XRE/HipB74.07NC_009665
4Shew185_1975-64.19Shew185_1974HTH_XRE/HTH_3/HTH_XRE/HipB74.17NC_009665
5Shew185_1863-64.19Shew185_1862HTH_XRE/HTH_3/HTH_XRE/HipB77.24NC_009665
6Shew185_2553-64.19Shew185_2554HTH_XRE/HTH_3/HTH_XRE/HipB77.24NC_009665
7Shew185_3361-64.19Shew185_3362HTH_XRE/HTH_3/HTH_XRE/HipB77.24NC_009665
8Shew185_2143-64.19Shew185_2142HTH_473.43NC_009665
9Shew185_0657-60.16Shew185_0656VapI71.86NC_009665
10Shew185_3883-60.16Shew185_3882HTH_XRE/HTH_XRE/HTH_373.96NC_009665
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.