TADB
Parvibaculum lavamentivorans DS-1 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 3914745
Link to NCBI Taxonomy Browser by Tax_id :402881
 
# TA INFO in replicon: NC_009719
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Plav_0020 Plav_0019 - 22104..22703 relBE */Xre-RelE
2 2 Plav_0216 Plav_0217 - 236368..236924 mazEF, ccd or relBE */RHH-MazF
3 2 Plav_0635 Plav_0636 - 699721..700493 relBE */Xre-RelE
4 2 Plav_0661 Plav_0660 - 724135..724784 vapBC */AbrB-PIN
5 2 Plav_0711 Plav_0710 - 771481..772049 RelBE or parDE */RHH-RelE
6 2 Plav_1047 Plav_1046 - 1149284..1149829 RelBE or parDE */RHH-RelE
7 2 Plav_1214 Plav_1215 - 1345022..1345695 vapBC */RHH-PIN
8 2 Plav_1617 Plav_1616 - 1752237..1752726 RelBE or parDE */RHH-RelE
9 2 Plav_1823 Plav_1824 - 1977168..1978039 -/Xre-COG2856
10 2 Plav_1954 Plav_1953 - 2131990..2132653 relBE */Xre-RelE
11 2 Plav_2160 Plav_2161 - 2341247..2342973 hipBA */Xre-HipA
12 2 Plav_2368 Plav_2369 - 2556784..2557976 -/COG5642-COG5654
13 2 Plav_2388 Plav_2387 - 2577139..2577965 -/ArsR-COG3832
14 2 Plav_2390 Plav_2391 - 2578677..2579485 -/ArsR-COG3832
15 2 Plav_2508 Plav_2507 - 2707854..2708698 -/ArsR-COG3832
16 2 Plav_2595 Plav_2596 - 2798089..2798731 vapBC */AbrB-PIN
17 2 Plav_2670 Plav_2671 - 2871266..2872160 -/ArsR-COG3832
18 2 Plav_2931 Plav_2932 - 3130780..3131615 -/ArsR-COG3832
19 2 Plav_2941 Plav_2942 - 3138901..3139471 relBE */Xre-RelE
20 2 Plav_3433 Plav_3434 - 3669481..3670325 relBE */AbrB-RelE
21 2 Plav_3471 Plav_3472 - 3716847..3717913 -/COG2442-PIN
22 2 Plav_3521 Plav_3520 - 3771873..3772546 vapBC */RHH-PIN
23 2 Plav_3645 Plav_3644 - 3901031..3901721 relBE */Xre-RelE

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Plav_2942VapI/HTH_XRE/HTH_XRE/HTH_393.29Plav_2941HigB/Plasmid_killer93.79NC_009719
2Plav_1616HTH_490.81Plav_1617RelE94.3NC_009719
3Plav_0019VapI/HTH_XRE/HTH_3/HTH_XRE/COG549991.45Plav_0020HigB/Plasmid_killer93.68NC_009719
4Plav_0710COG360987.05Plav_0711ParE/Plasmid_stabil91.36NC_009719
5Plav_1046COG360988.41Plav_1047Plasmid_stabil/ParE91.35NC_009719
6Plav_0323-60.06Plav_0322HTH_XRE/HTH_3/HTH_XRE/VapI73.03NC_009719
7Plav_1208-62.68Plav_1209HTH_XRE/HTH_3/HTH_XRE/HipB72.1NC_009719
8Plav_0340-62.61Plav_0339HTH_XRE/HTH_XRE/HTH_3/HipB70.96NC_009719
9Plav_0120-60.55Plav_0119HTH_4/COG360970.42NC_009719
10Plav_0661COG1848/PIN83.72Plav_0662-60.32NC_009719
11Plav_3527-62.68Plav_3526HTH_XRE/HTH_3/HTH_XRE/HipB72.1NC_009719
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.