TADB
Xanthobacter autotrophicus Py2 chromosome, complete genome. chromosome

# GENOME INFO
Genome size (bp) : 5308934
Link to NCBI Taxonomy Browser by Tax_id :78245
 
# TA INFO in replicon: NC_009720
#TypeToxinAntitoxinRegulatorLocationClassification(family/domain)
1 2 Xaut_0219 Xaut_0218 - 224108..224766 phd-doc */AbrB-Fic
2 2 Xaut_0275 Xaut_0276 - 277302..277920 relBE */Xre-RelE
3 2 Xaut_0551 Xaut_0552 - 622262..623496 -/Xre-COG2856
4 2 Xaut_0591 Xaut_0590 - 662212..664125 phd-doc */RHH-Fic
5 2 Xaut_0818 Xaut_0819 - 913120..913933 -/RHH-GNAT
6 2 Xaut_2097 Xaut_2098 - 2360154..2360626 hicBA */HicB-HicA
7 2 Xaut_2191 Xaut_2192 - 2450511..2451157 vapBC */RHH-PIN
8 2 Xaut_2562 Xaut_2561 - 2854717..2855354 vapBC */AbrB-PIN
9 2 Xaut_2650 Xaut_2649 - 2944392..2945010 relBE */Xre-RelE
10 2 Xaut_2852 Xaut_2853 - 3181936..3182765 -/RHH-GNAT
11 2 Xaut_3923 Xaut_3924 - 4341553..4342112 vapBC */RHH-PIN

: TA pair identified by RASTA-Bacteria .
* : TA family predicted based on the TA domain pair using the relationship in Table S2

The further putative TA pairs predicted by RASTA-Bacteria .
#ToxinDomain1Score1AntitoxinDomain2Score2Replicon
1Xaut_2649VapI/HTH_3/HTH_XRE/HTH_XRE/HipB89.02Xaut_2650HigB/Plasmid_killer94.49NC_009720
2Xaut_0276VapI/HTH_3/HTH_XRE/HTH_XRE/HipB89.02Xaut_0275HigB/Plasmid_killer94.49NC_009720
3Xaut_0218SpoVT_AbrB/MazE86.76Xaut_0219Doc/DOC86.95NC_009720
4Xaut_3830-66.68Xaut_3831Plasmid_stabil76.87NC_009720
5Xaut_0713-62.64Xaut_0714HTH_XRE/HTH_3/HTH_XRE/HipB75.86NC_009720
6Xaut_4573-63.55Xaut_4574VapC/PIN/COG184873.51NC_009720
7Xaut_3924-61.71Xaut_3923VapC/PIN/COG4113/COG184872.98NC_009720
8Xaut_3831Plasmid_stabil76.87Xaut_3832-60.32NC_009720
Note: The RASTA-Bacteria algorithm utilises rpsblast search and typical characteristics of TA loci, such as a two-gene, co-directed module coding for small proteins, to identify TA hits. RASTA-Bacteria TA pair hits with one score >70% and the other > 60% were recorded by TADB, this strict cut-off yields broadly reliable TA candidates.